Pairwise Alignments

Query, 752 a.a., DNA topoisomerase IV subunit A from Pseudomonas putida KT2440

Subject, 881 a.a., DNA gyrase subunit A (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  341 bits (875), Expect = 8e-98
 Identities = 250/795 (31%), Positives = 397/795 (49%), Gaps = 96/795 (12%)

Query: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKSARTVG 75
           SL +    +YL+Y+M VI+ RALP   DGLKPV RR+++AM EL  D +  +KKSAR VG
Sbjct: 12  SLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVG 71

Query: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135
           DV+GK+HPHGD + Y+ +V +AQ FS R+ LVDGQGN+G+ D   + AAMRYTE RL++ 
Sbjct: 72  DVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNA-AAMRYTEIRLAKI 130

Query: 136 AEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195
           A  +L+++ + TVD+  N+DG+ +EP VLP++LPN+L+NG+ GIAVGMAT++PPHNL EV
Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 196 ASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMRAVYRVE 255
             AC+ LL  P+A+I++L E +  PD+PT A I+     +   Y +GRG + MRA    E
Sbjct: 191 VDACLYLLRNPEASIDELMEIVPAPDFPT-AGIIYGINGVKDGYRTGRGKVVMRAKCHFE 249

Query: 256 DGD------IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPR 309
           D D      I+V  LP+QV+   + E++A  +  KK+  ++ ++DESD      ++ + R
Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309

Query: 310 SNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLVEWLEFRTNTVRRRL 369
               +V  ++ +L+  T L+ T+ +N+ +  +DG+P+L NL+ L+  +L+ R   V RR 
Sbjct: 310 GEVPEV--VLNNLYKQTQLQDTFGINM-VALVDGQPKLCNLKDLIQVFLQHRREVVTRRT 366

Query: 370 QHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIE----------------- 412
              L K  +R H+L+GL  A  N+DE I IIR    P  A  E                 
Sbjct: 367 VFNLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTR 426

Query: 413 ----------------------------RFELTEIQADYILETRLRQLARLEEMKIRGEQ 444
                                        + L++ QA  IL+ RL++L  LE+ KI  E 
Sbjct: 427 SRADGGVINADDYRPEGLEREYGMGGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEY 486

Query: 445 DELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDR---RSPIVARAEAKALSENEL 501
            +++ E   L  +L    ++  ++  EL    + +G  +   R  +V  +     +E+ +
Sbjct: 487 KDVMAEIDDLLDILAKPERVSTIIGEELGTIKQEFGQSKIGARRSLVEHSAYDLSTEDLI 546

Query: 502 MPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGFKAAAA-----------GRSNQFA 550
            PT+ V V LS  G++   K   +       + G G +A A              ++ + 
Sbjct: 547 TPTDMV-VTLSHSGYI---KSQPLGEYRAQKRGGRGKQATATKDDDWIDQLFIANTHDYI 602

Query: 551 VLIDSTGRSYSLAAHSLPS-ARG-QGEPLTGRLTPPPGATFECVL--------LPDDDAL 600
           +   + GR Y L    +P+ +RG +G P+        G      L         P D  +
Sbjct: 603 LCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYV 662

Query: 601 YVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPN--GAKVMTPRPVADREQDWLAAVTTEG 658
           ++  S       VK   L   N   KG +   N      +    + D + D +   +  G
Sbjct: 663 FMATSMG----TVKKTALDEFNNPRKGGIIAVNLDEGDYLIGAALTDGKHD-VMLFSDGG 717

Query: 659 RLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGATLVLQAGKRTLSLK 718
           + + F   D+  LG+       GV G  + + +  +  L    E  + VL A +     +
Sbjct: 718 KAVRFDEEDVRPLGRNAR----GVRGMSLEAGQGVIAMLVAEDEQQS-VLTATENGYGKR 772

Query: 719 ADDLEHYKGERGRRG 733
               E+ +  RG +G
Sbjct: 773 TSITEYTRHGRGTKG 787