Pairwise Alignments

Query, 752 a.a., DNA topoisomerase IV subunit A from Pseudomonas putida KT2440

Subject, 923 a.a., DNA gyrase, subunit A from Pseudomonas putida KT2440

 Score =  424 bits (1091), Expect = e-123
 Identities = 291/792 (36%), Positives = 432/792 (54%), Gaps = 91/792 (11%)

Query: 16  SLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKSARTVG 75
           ++ D   Q+YL+Y+M VI+ RALP   DGLKPV RR++YAMSELG D +  +KKSAR VG
Sbjct: 12  NIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVG 71

Query: 76  DVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRY 135
           DV+GK+HPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D   + AAMRYTE R+++ 
Sbjct: 72  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNA-AAMRYTEVRMTKL 130

Query: 136 AEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREV 195
           A  LL+++ + TVDWVPN+DGT Q PAV+P R+PN+L+NG++GIAVGMAT++PPHNL EV
Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 196 ASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMRAVYRVE 255
              C+ L+D P+ TI++L +HI GPD+PT A I+  R  I++ Y +GRG I MRA   +E
Sbjct: 191 IDGCLALIDNPEVTIDELMQHIPGPDFPT-AGIINGRQGIIEAYRTGRGRIYMRARSEIE 249

Query: 256 DGD-------IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIP 308
           D D       IV+T LP+Q++ A+++E+IA  ++ KK+  + +LRDESD +   RIVI  
Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDG-MRIVIEL 308

Query: 309 RSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLVEWLEFRTNTVRRR 368
           R   V  + ++ +L+  T L+S + +NV +  +DGRP+L NL+ LL  ++  R   V RR
Sbjct: 309 RRGEVP-EVVLNNLYQQTQLQSVFGINV-VALVDGRPRLLNLKDLLEAFVRHRREVVTRR 366

Query: 369 LQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA----------------LIE 412
               L K  +R H+L+G   A  N+D VI +I+    P +A                ++E
Sbjct: 367 TVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVE 426

Query: 413 R---------------------FELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQ 451
           R                     + L+  QA  IL+ RL +L  LE  K+  E  E+L++ 
Sbjct: 427 RAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQI 486

Query: 452 AKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVL 511
            +L  +L S  +L +++R EL      YGD RR+ I+  +    L+  +++P E   V +
Sbjct: 487 GELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASH--DLNYGDMIPEEERVVTI 544

Query: 512 SEKGWVRCAK----------GHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYS 561
           S  G+ +             G    ATG+  K  D  +      S+   +L  S G+ Y 
Sbjct: 545 SHGGYAKTQPLSAYQAQRRGGKGKSATGV--KDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 562 LAAHSLPSA--RGQGEPLTGRLTPPPGATFECVLLPDDDALYVVAS-----DAGYGFVVK 614
              + +P A    +G PL   L    G     +L  D +AL   A      D     V++
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLE 662

Query: 615 GEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVSDLPQLGKG 674
           GE ++A+       +   +G    TP  VA+    ++   T  G +   K + L Q  + 
Sbjct: 663 GELVEAEE------VDEEDGD---TPEWVAEPTGAYIFMATASGTV---KKTPLVQFARP 710

Query: 675 KGNKIIGVPGDRVASREEFVTDLAVIPEGATLVL---QAGKRTLSLKADDLEHYKGERGR 731
           + N +I      +  +E      A I +GA  V+    AGK     ++   E  +  RG 
Sbjct: 711 RSNGLIA-----LKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMGRNARGV 765

Query: 732 RGSKLPRGFQRV 743
           RG KL +G QR+
Sbjct: 766 RGMKLGKG-QRI 776



 Score = 30.0 bits (66), Expect = 6e-04
 Identities = 31/171 (18%), Positives = 70/171 (40%), Gaps = 3/171 (1%)

Query: 517 VRCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEP 576
           V+ A+        L  K GD   AAA     +  ++    G+    A  S+    G+   
Sbjct: 705 VQFARPRSNGLIALKLKEGDTLIAAAITDGAKEVMMFSDAGKVIRFA-ESVVREMGRNAR 763

Query: 577 LTGRLTPPPGATFECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSL-PNGA 635
               +    G     +L+P+  +  + AS+ G+G          + + G+G++++   G 
Sbjct: 764 GVRGMKLGKGQRIISMLIPESGSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGR 823

Query: 636 KVMTPRPVADREQDWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGVPGD 685
             +    +  +E + +  ++ +G L+  +V ++  L +  +G  +I +  D
Sbjct: 824 NGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVSSLSRNTQGVTLIKLAAD 874