Pairwise Alignments

Query, 752 a.a., DNA topoisomerase IV subunit A from Pseudomonas putida KT2440

Subject, 842 a.a., DNA gyrase, A subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  389 bits (999), Expect = e-112
 Identities = 227/572 (39%), Positives = 351/572 (61%), Gaps = 25/572 (4%)

Query: 24  AYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKSARTVGDVLGKFHP 83
           AY++YSM VI+ RALP + DG+KPV RRI++ M ELG+  +  +KKSAR VG+VLGK+HP
Sbjct: 21  AYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNKPYKKSARIVGEVLGKYHP 80

Query: 84  HGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTEARLSRYAEVLLSEV 143
           HGDSA YE MV MAQ +S RY LVD QGN+G+ D   + AAMRYTEARL R AE LL+++
Sbjct: 81  HGDSAVYETMVRMAQDWSLRYPLVDPQGNFGSIDGDNA-AAMRYTEARLKRIAEELLTDI 139

Query: 144 GQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPPHNLREVASACVRLL 203
            + TVD+  NFD +L+EP VLPA++P +LLNG +GIAVGMAT++ PH L EV    +  +
Sbjct: 140 NKETVDFQLNFDDSLKEPVVLPAKIPALLLNGASGIAVGMATNMAPHQLGEVIDGTIAYI 199

Query: 204 DEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMRAVYRVEDGD----- 258
           +    T+E+L +H+  PD+PT   I+     +   YE+GRG + MR    +E  D     
Sbjct: 200 ENNDITVEELMKHVIAPDFPT-GGIIYGYNGVKSAYETGRGRVVMRGKATIETKDTGKEM 258

Query: 259 IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRIVIIPRSNRVDVDEL 318
           I++  +P+ V+ A ++E+ A  +Q KKL  ++ +RDESD     RIV   + + +  + +
Sbjct: 259 IIINEIPYLVNKANMIEKTAQLIQEKKLEGISAIRDESDRRG-MRIVYELKRDAI-ANVV 316

Query: 319 MQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLVEWLEFRTNTVRRRLQHRLDKVEK 378
           + +L+  T L++++ +N N+  + GRP   NL+ L+V ++  R   V RR ++ L + EK
Sbjct: 317 LNNLYKQTQLQTSFSIN-NVALVKGRPYTLNLKELIVHYVNHRHEVVTRRTEYELREAEK 375

Query: 379 RLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA---LIERFELTEIQADYILETRLRQLARL 435
           R H+L G L A  NLDEVI +IR    P+ A   L+E+FELTEIQA  IL+ RL++L  +
Sbjct: 376 RAHILQGYLIALDNLDEVISLIRNSRDPETARTGLMEKFELTEIQARAILDMRLQRLTGM 435

Query: 436 EEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKA 495
           E  KI+ E +EL+     L+ +L  + +  +++++EL +  E Y D+RR+ I   AE   
Sbjct: 436 EREKIQKEYEELMLLIEDLKDILEKKERRMEIIKTELSEIKERYNDERRTTIEHNAE--D 493

Query: 496 LSENELMPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSN 547
            S  +++P E V + +S +G+V        R      + + G+S K  D  +   +  ++
Sbjct: 494 FSYEDMIPNEEVIITVSHQGYVKRTALKEYRTQGRGGVGSRGVSTKDDDYTEYLFSASTH 553

Query: 548 QFAVLIDSTGRSYSLAAHSLP--SARGQGEPL 577
            + ++    G+ + L  +++P  S   +G P+
Sbjct: 554 NYLLIFTDKGKLFWLKTYAIPEGSKTSKGRPI 585



 Score = 26.6 bits (57), Expect = 0.006
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 597 DDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSL---PNGAKVMTPRPVADREQDWLAA 653
           ++A  +V S+ GYG     E+ +  N+ GKG+ ++        ++  + V D   D L  
Sbjct: 713 EEATLLVVSEKGYGKRSAVEEYRITNRGGKGVKAMNVTDKTGSLVAIKSVID--SDDLMI 770

Query: 654 VTTEGRLLVFKVSDLPQLGK 673
           +   G ++   VS L  +G+
Sbjct: 771 INKSGIIIRTPVSGLRIMGR 790