Pairwise Alignments

Query, 476 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas putida KT2440

Subject, 558 a.a., N-acetylmuramoyl-L-alanine amidase AmiB from Dickeya dadantii 3937

 Score =  294 bits (753), Expect = 5e-84
 Identities = 191/491 (38%), Positives = 283/491 (57%), Gaps = 32/491 (6%)

Query: 1   MRIRALVAIVGLLLTTVTVEALAVTQVKSMRLWRAPDNTRLVFDLSGPVQHSVFTLSAPD 60
           M +R + A++GL+L  +    L  + +  +R+  A     +    SG   +  F+L+ P+
Sbjct: 1   MTVRLMKALLGLML--MLSSPLWASSLTDIRVNNAASEAVVTLSFSGQPVYEYFSLNNPN 58

Query: 61  RLVIDINGATLAAPLNVA-TSNTPISSVRSAQ-RTPTDLRVVVDLKKSVTPKSFTLAPNA 118
           R+VIDI+ + +   L +A      I+ +R++  + P  LR+V+DL +    ++       
Sbjct: 59  RVVIDISQSGMMKGLPLAFNGQNLIARIRTSNAKDPKSLRLVLDLTQKAQVQA------V 112

Query: 119 QYGNRLVVDLYDQEADAIAASAPPPAPAPVQTPATTPAVPVTPAQPAIKLPPVPSGK--- 175
           + GN  V  L  +   A+  SA  PA    Q     P VP T A  A   P   SG+   
Sbjct: 113 KEGNGAVFTLTGERKTALRKSAVQPAQPSAQA-GRNPLVPQTSAVAAT--PTRVSGRVGS 169

Query: 176 -RDIVVAIDAGHGGEDPGASGSRGQHEKDIVLQIAKELQRQINSEKGFRAELTRTGDYFI 234
              I+VAIDAGHGG+DPGA+G  G HEK++ + IA++L+  ++++  F+  LTR GDYFI
Sbjct: 170 GEKIIVAIDAGHGGQDPGATGPGGLHEKNVTISIARKLRAIMSADPAFKPVLTRDGDYFI 229

Query: 235 PLRKRTEIARKKGADLFISIHADAAPSRAAFGASVFALSDRGATSETARWLADTENRSDL 294
            +  R+++ARK+GA+L +SIHADAAP+R A GASV+ LS+R A SE A WL   E +S+L
Sbjct: 230 SVMGRSDVARKQGANLLVSIHADAAPNRGATGASVWVLSNRRANSEMANWLEQHEKQSEL 289

Query: 295 IGGAGNVSLDD-KDRMLAGVLLDLSMTATLSSSLNVGQKVLGNMGRVTSLHKQRVEQAGF 353
           +GGAG++  +   D  L+  +LDL    +     +V  KVL  + RV SLHK+R E A  
Sbjct: 290 LGGAGDLLANSAADPYLSQAVLDLQFGHSQRVGYDVAVKVLRELQRVGSLHKRRPEHASL 349

Query: 354 MVLKSPDIPSILVETGFISNNNEAAKLASSSHQQALARSIRTGVHQYFQQNP-------- 405
            VL+SPDIPS+LVETGFISN +E   L S+ +Q+ +A +I  G+  YFQ +P        
Sbjct: 350 GVLRSPDIPSLLVETGFISNPSEERLLGSNEYQEKIANAIYQGLRSYFQTHPLQNIPKQE 409

Query: 406 --PPGTYI---AWLRDTGKIAAGPR-EHTVRPGETLAMLAVRYQVSVASLRSINSLKTDE 459
             P G+     A   +  +IA G    HTV  GETL+ +A RY VS++++R  N LK D 
Sbjct: 410 NRPLGSQTVKNAAATEPAQIATGATVRHTVATGETLSGIAARYGVSMSAIRDANRLKKDV 469

Query: 460 LKVGQRLDVPA 470
           + VGQRL +P+
Sbjct: 470 VWVGQRLKIPS 480



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 15/45 (33%), Positives = 31/45 (68%)

Query: 426 EHTVRPGETLAMLAVRYQVSVASLRSINSLKTDELKVGQRLDVPA 470
           +H V  G+TL+ +A RY VS+ +++  N++ +  +++GQ L +P+
Sbjct: 513 KHKVTRGDTLSAIASRYGVSMKAIQQANNMSSGTVQLGQTLIIPS 557