Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

 Score = 1401 bits (3627), Expect = 0.0
 Identities = 694/866 (80%), Positives = 766/866 (88%), Gaps = 14/866 (1%)

Query: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALR 60
           MADWQSLDPEAAREAEKY+NPIPSRELIL  LADRG PA+RE+L +EFGL  EDQ+EALR
Sbjct: 1   MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR 60

Query: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMR 120
           RRLRAMERD QLIYTRRGTYAPVDKLDLI GR++GHRDGFGFLIPDDGS+DLF+SP+QMR
Sbjct: 61  RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR 120

Query: 121 LVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEV 180
           LVFDGDR LARVSG+DRRGRREGV+VEV+SRAHES+VGRYFEEGGIG+V PDNPK+QQEV
Sbjct: 121 LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVPDNPKVQQEV 180

Query: 181 LVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHV 240
           L+T GRNG AK+GQFVE+KITHWPT RFQPQGD+VEV+GNYMAPGMEIDVALR+YDIPHV
Sbjct: 181 LITPGRNGAAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV 240

Query: 241 WPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPL-GKLRLFS 299
           WP  V+KEA K + EVEEKDKEKR+DLRHLPFVTIDGEDARDFDDAVYCE   GKLRLFS
Sbjct: 241 WPEAVLKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS 300

Query: 300 GGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDR 359
           GGW+L+VAIADVSSYV++GSALD EAQ RGNSVYFPERV+PMLPE+LSNGLCSLNP VDR
Sbjct: 301 GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR 360

Query: 360 LAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVP 419
           LAMVCEMT++K G+M DYQFYE VIHS ARLTYNKVS++LE  +T E KALR EY  VVP
Sbjct: 361 LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVP 420

Query: 420 DLKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLA 479
            LK LY+LYKVL+ ARHTRGAIDFETQETRI+FG ERKIA I PT RNDAHKLIEECMLA
Sbjct: 421 HLKQLYSLYKVLLGARHTRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLA 480

Query: 480 ANVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKD-PSPKDYQALLA 538
           ANVATAEFL+KH +PALYRVHDGPPPERLEKLRAFLGELGLSLHKGKD P+PKDYQALLA
Sbjct: 481 ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLA 540

Query: 539 SIAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRS 598
           SI  RPD+H+IQTVMLRSLSQAVYS +N GHFGLNYEAYTHFTSPIRRYPDLL HRAIRS
Sbjct: 541 SIKDRPDYHVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS 600

Query: 599 IIRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCE 658
           +I SK +TPHVKRAGAM+IPKARIYPYDE  LEQLGEQCSM+ERRADEATRDVVNWLKCE
Sbjct: 601 VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE 660

Query: 659 FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTG 718
           FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHV+ALPGDYYHFDPVHHRLAGERTG
Sbjct: 661 FMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG 720

Query: 719 RSFRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKA 778
           RSFRLGDT+EV+VMRVDLDERKIDF +S+K   +P  RK+RG+ P A K +  PA    A
Sbjct: 721 RSFRLGDTVEVQVMRVDLDERKIDFGMSDKPAESPGSRKKRGSEP-ASKGKAAPAKATAA 779

Query: 779 TPKP------RSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDARS----SAGSKSE 828
            P P       S K +A EAY P DA  +NAE+RKSRE+K+ L+ +A+S    ++G KS 
Sbjct: 780 EPAPAKAGRRSSTKEKAPEAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGKSR 839

Query: 829 KGGKPSGKPTKHRKGPPKSG-APRKN 853
               PS KP+KHRKGPPK+G AP K+
Sbjct: 840 GAENPSSKPSKHRKGPPKAGSAPAKS 865