Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 804 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Sphingobium sp. HT1-2

 Score =  334 bits (856), Expect = 1e-95
 Identities = 253/784 (32%), Positives = 394/784 (50%), Gaps = 56/784 (7%)

Query: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALR 60
           MA  Q     A   A+      P+R+ ++  + +   PA + E+AK FGL  +++I AL+
Sbjct: 1   MASTQKQKKAAPARAKVRPAGFPTRQQVMDFITESDTPAGKREIAKAFGLKGQEKI-ALK 59

Query: 61  RRLRAMERDGQL-IYTRRGTY--APVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPS 117
             L+ M  +G L I   R  +    V K+ ++  R+    D      P+    +   +P 
Sbjct: 60  ALLKDMADEGLLDIGPARAFHKMGGVPKVTVL--RIVDVDDTTLIATPERWEAEGQPAP- 116

Query: 118 QMRLVFDGDRGLARVSGVDRRGRR-----EGVL---VEVISRAHESVVGRYFEEG-GIGY 168
           ++R+V  G RG   +   DR   R     +G L   ++ +++A E ++G   E   G  +
Sbjct: 117 RIRVVERGKRGALTIG--DRILARTEEAGKGWLAHPMKKLAKATEMLLGVVEEMADGKLW 174

Query: 169 VTPDNPKIQQEVLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEI 228
           + P + +I+++  ++    G AK G  V  + T  P PR   +  V +++G+  AP    
Sbjct: 175 LRPVDKRIRKDTPISD--IGTAKKGDLVLAEPTGRP-PRISAR--VTDILGDPFAPRSFS 229

Query: 229 DVALRSYDIPHVWPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVY 288
            +A+  + IPHV+P  V +EA    +      ++KR DLRHLP V ID  DARD DDAV+
Sbjct: 230 LIAIHKHGIPHVFPEAVEEEA--VTASKLPLHEDKREDLRHLPIVAIDPVDARDHDDAVW 287

Query: 289 CEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSN 348
             P  +     GG++  VAIADVS YVR GSALD EA++RGNSVYFP+ VVPMLP +LS+
Sbjct: 288 AAP-DEDPTNEGGYKAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSS 346

Query: 349 GLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSML--------- 399
            +CSL    DR AM C + ++  G++  ++F   +I   A L Y    + +         
Sbjct: 347 DMCSLRAGQDRAAMACHLVIDAQGKVKSFRFSRAIIRVAAVLAYENAQAAIDALSSVRPE 406

Query: 400 --EHSRTREGKALREEYKEVVPD-------------LKNLYNLYKVLVEARHTRGAIDFE 444
             E     EG+A     ++                 LK L+  + +L +AR  R  +  +
Sbjct: 407 PVEGQGRAEGEAASPAAQQAASTSLSPNGVDLVEHALKPLWACWALLRKAREKRDPLALD 466

Query: 445 TQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHDGPP 504
             E R++  E  KI  +    R DAH LIE+ M+AANVA A+ L+    P +YRVH+ P 
Sbjct: 467 LPERRVVLDEWGKIVSVAVRERLDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPG 526

Query: 505 PERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAVYST 564
            ++L  L+ +L    +    G+   P  +  L+  +    +   I T +LRS +QA Y+ 
Sbjct: 527 RDKLVALKEYLATFDIDFALGQVIRPSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAP 586

Query: 565 ENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKVDTPHVKRAGAMSIP-KARIY 623
           +N GHFGL   +Y HFTSPIRRY DLLVHRA+      ++  P  K     +IP ++ + 
Sbjct: 587 QNMGHFGLALGSYAHFTSPIRRYADLLVHRALVGAYDLELPAPKGK-----AIPDRSSLS 641

Query: 624 PYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRVGETFPGVITAVTGFGLFVE 683
             D   + ++GE  S  ERRA EA R+ ++     F+   VGE     IT V  FG F  
Sbjct: 642 QEDYENMGRVGEMISGHERRAMEAERETIDRYVAAFLSAHVGEVVKARITGVQNFGFFAT 701

Query: 684 LTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRSFRLGDTIEVKVMRVDLDERKIDF 743
           +  +  +GLV VS L  +++ FD     L G  +G  + +G  +E+++   D     + F
Sbjct: 702 VEGLGGDGLVPVSTLGAEHFFFDEAGKALQGVESGDRYTVGQRLELRLAEADPINGALRF 761

Query: 744 EVSE 747
           E+ +
Sbjct: 762 ELPD 765