Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 722 a.a., 3'-to-5' exoribonuclease RNase R from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  613 bits (1581), Expect = e-179
 Identities = 343/744 (46%), Positives = 467/744 (62%), Gaps = 48/744 (6%)

Query: 122 VFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEVL 181
           V   DR  AR+  +DR+GR EG + E++ R+   ++GR  +E G+  V P++ +  Q+VL
Sbjct: 1   VLHKDRVKARIVRLDRKGRPEGRVTEIVERSDSPIIGRLLQESGVWLVAPEDKRYGQDVL 60

Query: 182 VTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVW 241
           +  G  G AK GQ V +++T  P    QP G V EV+G    PGMEI++A+R Y +PH +
Sbjct: 61  IPKGATGSAKPGQVVVVQLTEPPALYGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEF 120

Query: 242 PNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEP--LGKLRLFS 299
            +  + +AR     V   D + RVDLR +P VTIDGEDARDFDDAVYCEP  +GK +   
Sbjct: 121 SDAALAQARALPDHVRAADHKHRVDLRDVPLVTIDGEDARDFDDAVYCEPAKVGKGK--- 177

Query: 300 GGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDR 359
            GWRL VAIADVS YV  GS +DV+A  R  SVYFP RV+PMLPE+LSNGLCSLNP V+R
Sbjct: 178 -GWRLLVAIADVSHYVETGSPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVER 236

Query: 360 LAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVP 419
           L MVC+M +N  G++  YQFY  V+ SHAR TY +V+++L+++R  E      + K +VP
Sbjct: 237 LCMVCDMLVNAKGEVHAYQFYPAVMFSHARFTYTEVAAILQNTRGPEAA----QRKALVP 292

Query: 420 DLKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLA 479
            L NL+++Y+ L+ AR  RGA+DFET ET+I+  E  +I +I P  RNDAHKLIEE MLA
Sbjct: 293 YLLNLHDVYRALLAARGERGAVDFETTETQIVCDESGRIEKIVPRTRNDAHKLIEEAMLA 352

Query: 480 ANVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLAS 539
           ANV +A+F+Q+     L+RVH+GP PE+ E LR +L  +G+S   G +P P D+QA+  +
Sbjct: 353 ANVCSADFIQQGKHTGLFRVHEGPTPEKQEILRNYLKAMGVSQTIGDNPKPGDFQAIANA 412

Query: 540 IAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSI 599
              RP+   I T++LRS+ QA+Y+  N+GHFGL +EAYTHFTSPIRRYPDLLVHR I++I
Sbjct: 413 TKDRPEAQQIHTMLLRSMQQAIYTPVNSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAI 472

Query: 600 I-RSKVDTPHV-----------KRAGAMSIPKARIYPYDENTLEQL-----GEQCSMTER 642
           + R + + P++           KR  +   P     P  + + + L     G  CS  ER
Sbjct: 473 LARKRYELPNLPTPGEAHAKLSKRLASRVRPPVAGEPVKKPSADTLAWQAAGLHCSANER 532

Query: 643 RADEATRDVVNWLKCEFMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDY 702
           RADEA+RDV  WLKC++M++ +GE F GV+TAVT FGLFV L  +YVEGLVH++ L G+Y
Sbjct: 533 RADEASRDVEAWLKCKYMREHLGEEFSGVVTAVTSFGLFVTLDAMYVEGLVHITELGGEY 592

Query: 703 YHFDPVHHRLAGERTGRSFRLGDTIEVKVMRVDLDERKIDFEV--SEKTLAAPIGRKQRG 760
           + FD     L GERTG  + LG  ++V+V RVDLD R+IDF +      L     R + G
Sbjct: 593 FRFDEARQELRGERTGIRYALGTRVKVQVSRVDLDGRRIDFRLVSDNDDLVLRAMRDKTG 652

Query: 761 AAPVAEKAEQQPATEAKATPKPRSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDAR 820
            +P    A    A  A+A    RSR   A +         R+A+V    E+K A+    R
Sbjct: 653 MSP----ASDNQAPPARAGKARRSRSEGAPQG--------RHAQV-PPMEVKAAV----R 695

Query: 821 SSAGSKSE--KGGKPSGKPTKHRK 842
            +AG K +  +GG   G  +  RK
Sbjct: 696 KAAGKKDKGARGGGARGTASPSRK 719