Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 742 a.a., ribonuclease R from Magnetospirillum magneticum AMB-1

 Score =  410 bits (1055), Expect = e-118
 Identities = 272/722 (37%), Positives = 385/722 (53%), Gaps = 40/722 (5%)

Query: 21  PIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALRRRLRAMERDGQLI------Y 74
           PIPS++ IL  +  +     + ELA+ F L   D+I+ L+  L+ +ER+G +       +
Sbjct: 8   PIPSKQEILDFIRSQPGRVGKRELARAFNLRGSDKID-LKAILKELEREGVVERGQKRRF 66

Query: 75  TRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSED-LFLSPSQM--RLVFDGDRGLAR 131
              GT   V  +++I     G           +G    +F++P +     V  GDR LA+
Sbjct: 67  ASPGTLPDVGVVEIIGTDSDGELLARPLNYEGEGRPPRIFMAPFRAGEAAVGVGDRVLAK 126

Query: 132 VSGVDRRGRREGVLVEVISRAHESVVGRYFEEG--GIGYVTPDNPKIQQEVLVTAGRNGG 189
           +  V      E   + +I  A   V+G  FE    G G + P + K + E +V  G  G 
Sbjct: 127 LKRVRGEDVYEARAIRIIGEARARVLG-VFEPNPDGSGRLRPTSRKEKAEYMVPRGETGD 185

Query: 190 AKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVWPNDVVKEA 249
           AK G+ V   I        +    V E +G   AP     VA+ + D+P  +P   +++A
Sbjct: 186 AKAGELVLADIMPGRLYGMRT-ASVKERMGLLGAPRSVSLVAIHTNDVPFEFPEAALQQA 244

Query: 250 RKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIA 309
               +        +R DLR +P VTIDGEDARDFDDAV+ EP    +   GGW   VAIA
Sbjct: 245 ----AAEGPAPMNERTDLRSIPLVTIDGEDARDFDDAVFAEPDPDPKN-PGGWHCMVAIA 299

Query: 310 DVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMN 369
           DVS YVR G +LD EA +RGNSVYFP+RVVPMLPEELSNG CSL P  DR  M     ++
Sbjct: 300 DVSWYVRPGDSLDKEAFKRGNSVYFPDRVVPMLPEELSNGWCSLKPDEDRPCMAVHFWLD 359

Query: 370 KAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYK 429
             G  + ++F  G++ S ARLTY +V +       ++G         + P ++ LY  + 
Sbjct: 360 ALGNKLHHRFVRGMMRSVARLTYTQVQA------AKDGTPDDRTGPLLAPVIEPLYGAWA 413

Query: 430 VLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQ 489
            L   R  RG ++ +  E ++    E K+  I    R D+H+LIE+ M+ ANV  AE L+
Sbjct: 414 ALFRERKERGVLELDIPERKVTITPEGKVEAITERERFDSHRLIEDFMIMANVCAAETLE 473

Query: 490 KHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLI 549
           K   P +YR+HD P  E+L+ LR FL  + L L KG+   P  +  +L ++ G  + HL+
Sbjct: 474 KVHKPCMYRIHDLPSQEKLDGLREFLSSMDLKLAKGQVLRPAHFNRILEAVEGTANSHLV 533

Query: 550 QTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKVDTPHV 609
             V+LRS +QA YS EN GHFGL    Y HFTSPIRRY DLLVHRA+ S +       H+
Sbjct: 534 SEVILRSQAQAQYSPENIGHFGLGLARYAHFTSPIRRYADLLVHRALISGL-------HL 586

Query: 610 KRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRVGETFP 669
              G   +P   +  + E      GE  S+TERRA  A R+ V+     F+ D+VG TF 
Sbjct: 587 GEGG---LPADAVAEFAE-----WGEHISVTERRAATAEREAVDRYVTAFLADKVGATFA 638

Query: 670 GVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRSFRLGDTIEV 729
           G ++ VT FGLFV L     +GLV +S LP D+Y  D VHH L G+RT ++F+LG  ++V
Sbjct: 639 GKVSGVTRFGLFVTLDQTGADGLVPISTLPEDFYVHDEVHHCLVGKRTRKTFQLGQKLDV 698

Query: 730 KV 731
           ++
Sbjct: 699 EL 700