Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 825 a.a., ribonuclease R from Dickeya dianthicola ME23

 Score =  804 bits (2076), Expect = 0.0
 Identities = 429/851 (50%), Positives = 564/851 (66%), Gaps = 34/851 (3%)

Query: 6   SLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALRRRLRA 65
           S DP   REAEKY++PIPSRE IL+ LA R  P +REELA +  L  ++Q+EALRRRLRA
Sbjct: 2   SQDPFLEREAEKYESPIPSREYILEHLAKRDTPISREELATDLQLTSDEQLEALRRRLRA 61

Query: 66  MERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSEDLFLSPSQMRLVFDG 125
           MERDGQL++TRR  YA  +KLDL+ G V GHRDG+GFL  +   +DL+LS  QM+ V  G
Sbjct: 62  MERDGQLVFTRRQCYALPEKLDLLRGTVLGHRDGYGFLRVEGRKDDLYLSAEQMKTVIHG 121

Query: 126 DRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAG 185
           D  LA+  G DRRGRREG +V ++      +VGRYF E G G+V PD+ ++  ++L+ + 
Sbjct: 122 DVVLAQPLGEDRRGRREGRIVRILEPRTNQIVGRYFTEAGTGFVVPDDSRLSFDILIPSE 181

Query: 186 RNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVWPNDV 245
              GA++G  V +++T   T R +  G +VE++G+ M  G+ +D+ALR+++IPH WP  V
Sbjct: 182 FIAGARMGSVVVVELTQRATRRTKAIGKIVEILGDNMGTGLAVDIALRTHEIPHSWPPKV 241

Query: 246 VKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLY 305
            ++      EV E  K+ R+DLR LP VTIDGEDARDFDDAVYCE     +   GGWRL+
Sbjct: 242 EEQVSDLADEVPEDAKKGRIDLRSLPLVTIDGEDARDFDDAVYCE-----KKRGGGWRLW 296

Query: 306 VAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCE 365
           VAIADVS YVR G+ALD EA+ RG SVYFP +VVPMLPE LSNGLCSLNP VDRL MVCE
Sbjct: 297 VAIADVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCE 356

Query: 366 MTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLY 425
           MT++  G++  Y FYE V+ SHARLTY KV S+L+       +ALRE Y+ +V  L+ L+
Sbjct: 357 MTVSTQGKLSGYTFYEAVMSSHARLTYTKVWSILQGD-----EALREHYQPLVAPLEELH 411

Query: 426 NLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATA 485
            +YKVL  AR  RG I FET+E + IF  ER+I  +   VRNDAHKLIEECM+ AN++ A
Sbjct: 412 QMYKVLDHAREVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAA 471

Query: 486 EFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPD 545
           +F++K+  PAL+RVHD P  + +  LR+ LGELGL+L  G  P PKDY  L+ SIAGRPD
Sbjct: 472 KFVEKNEEPALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNSIAGRPD 531

Query: 546 FHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRS-KV 604
             ++QT++LRS+ QAVY  EN GHFGL   +Y HFTSPIRRYPDL +HRAI+ ++   K 
Sbjct: 532 HEMLQTMLLRSMKQAVYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDRKA 591

Query: 605 DTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRV 664
              H   +G         +  D N + QLGE CSMTERRADEATRDV +WLKC+FM+D V
Sbjct: 592 CWTH---SGG--------WHADFNEMLQLGEHCSMTERRADEATRDVADWLKCDFMQDHV 640

Query: 665 GETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRSFRLG 724
           GE F G+I++VTGFG FV L D++++GLVHVS L  DYY +D V  RL GE  G+ +RLG
Sbjct: 641 GEAFTGIISSVTGFGFFVRLNDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESRGQVYRLG 700

Query: 725 DTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVA-EKAEQQPATEAKATPKPR 783
           D ++++V  V +DERKIDF +   T      RK RG    A ++ ++  A++AK    PR
Sbjct: 701 DEVQIRVEAVHMDERKIDFALLSST------RKVRGEGKTARDRVKKGAASDAK---PPR 751

Query: 784 SRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDARSSAGSKSEKGGKPSGKPTKHRKG 843
            R++       P  A + + + ++    K      A++  G K+EK  K + K  K    
Sbjct: 752 RRRTGQRANVEPDSAFRPDGDGKRQSAGKG--KDKAKAGGGKKTEKSQKNAEKTRKIAAA 809

Query: 844 PPKSGAPRKNK 854
                A +K K
Sbjct: 810 TRAKRASKKKK 820