Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 643 a.a., exoribonuclease II from Dickeya dianthicola ME23

 Score =  196 bits (498), Expect = 4e-54
 Identities = 189/666 (28%), Positives = 290/666 (43%), Gaps = 67/666 (10%)

Query: 91  GRVSGHRDGFGFLIPDDGSEDLFLSPSQMRLVFDGDRGLARVSGVDRR--GRREGVLVEV 148
           G V     GFGFL   D  +  F+ P QM+ V  GDR +A +     R     E ++   
Sbjct: 24  GIVKATDKGFGFL-EADAQKSYFIPPPQMKKVMHGDRIIAALHTEKEREIAEPETLVEPF 82

Query: 149 ISRAHESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRN--GGAKIGQFVEIKITHWPTP 206
           ++R     VGR  ++     + PD+P ++  +     R      K G +   ++   P  
Sbjct: 83  LTR----FVGRVQKKDDRLSIVPDHPLLKDAIPCRPARGVEQDFKAGDWAVAEMRRHPLK 138

Query: 207 RFQPQ-GDVVEVIGNYMAPGMEIDVALRSYDIPHVWPNDVVKEARKFRSEVEEKDKEKRV 265
             +    D+   I     P     V L  +++  + P+    E    + E        R 
Sbjct: 139 GDRGFFADLTHYITTGDDPLAPWWVTLSRHNLERIAPDADAAELNDGQLE--------RE 190

Query: 266 DLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAIADVSSYVRLGSALDVEA 325
           DL  L FVTID     D DDA+Y +  G      G   + VAIAD ++YVR  S LD  A
Sbjct: 191 DLTGLDFVTIDSASTEDMDDALYVQDNG-----DGTLDMTVAIADPTAYVRADSELDAIA 245

Query: 326 QQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTMNKAGQMVDYQFYEGVIH 385
           +QR  + Y P   +PMLP  LS+ +CSL P+  R  + C MT+   G +   +F+   I 
Sbjct: 246 RQRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLACRMTIAADGALSQIRFFAAWIE 305

Query: 386 SHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLYKVLVEARHTRGAIDFET 445
           S A+L Y+ VS+ LE          + E   +   ++ L+ +       R T   +  + 
Sbjct: 306 SRAKLVYDDVSNWLEQQGD-----WQPESDNIADQIRLLHRVCLARNAWRTTHALVFRDR 360

Query: 446 QETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFLQKHGVPALYRVHDGPPP 505
            + R + GE  ++ +I    R  A++++EE M+AANV  A+ L+      +Y VH+G  P
Sbjct: 361 PDYRFLLGENGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLRDALGFGVYNVHNGFDP 420

Query: 506 ERLEKLRAFLGELGLSLHKGKDPSPKDYQALLASIAGRPDFHLIQTVMLRSLSQAVYSTE 565
             +++  A L   G+     +  +   +  L   +  +P    + + + R  + A  ST 
Sbjct: 421 VSIDQAVAVLESNGIQADAQQLLTLDGFCVLRRELDAQPT-QFLDSRIRRFQTFAEISTA 479

Query: 566 NNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKVDTPHVKRAGAMSIPKARIYPY 625
              HFGL  EAY  +TSPIR+Y D++ HR ++++I     TP  K             P 
Sbjct: 480 PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVI---THTPAEK-------------PQ 523

Query: 626 DENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMKDRVG--ETFPGVITAVTGFGLFVE 683
           DE TL QL E+     R    A RDV +WL   F+KD+ G    F G I  V   GL V 
Sbjct: 524 DEVTL-QLAER----RRLNRMAERDVSDWLYARFLKDKAGTDARFTGEIMDVNRGGLRVR 578

Query: 684 LTDIYVEGLVHVSALPGDYYHFDPVHHRL-AGERTG-------RSFRLGDTIEVKVMRVD 735
           L +      +     P  + H   V   L   + TG         +R  DT+ V +  V 
Sbjct: 579 LLENGATAFI-----PASFIH--AVRDELVCSQDTGIVTVKGEPVYRQSDTLTVMLTEVR 631

Query: 736 LDERKI 741
           L+ R I
Sbjct: 632 LETRNI 637