Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 724 a.a., ribonuclease R from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  372 bits (954), Expect = e-107
 Identities = 237/744 (31%), Positives = 379/744 (50%), Gaps = 46/744 (6%)

Query: 14  EAEKYDNPIPSRELILQRLADR-GEPAAREELAKEFGLYEEDQIEALRRRLRAMERDGQL 72
           +A+K +N     E IL  L    GE  + +++ ++  + ++    ++   L  +   G +
Sbjct: 14  KADKINNAAQLAERILHFLDSHYGEEYSLKQIIRKLNIRDKITKGSVEPVLHKLVAAGSV 73

Query: 73  IYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPD---DGSEDLFLSPSQMRLVFDGDRGL 129
               R  ++     D I G V      F F++PD   +G ED+ +    ++   D D+  
Sbjct: 74  SKNPRNHFSSTKTPDFIEGTVDFVNPRFAFIVPDKKGEGEEDILVKARDLKNALDDDKVR 133

Query: 130 ARVSGVDRRG-RREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQQEVLVTAGRNG 188
             V+     G +REG ++EV+ RA E  VGR        +V  D  K+  ++ +      
Sbjct: 134 VMVNPPKHAGQKREGRVLEVVKRAREEFVGRVEISPRFAFVVSDFKKMHHDIFIRKSDLN 193

Query: 189 GAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPHVWPNDVVKE 248
           GA+  Q V +KIT W      P G V++V+G      +EI   +  + +P  +P+++V+E
Sbjct: 194 GAEHNQKVVVKITEWRDEDKNPTGKVLQVLGEAGEHEVEIHSIMAEFGLPFEYPDEIVQE 253

Query: 249 ARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFSGGWRLYVAI 308
           A     ++ + D + R D R +   TID  DA+DFDDA+  +     RL +G   + V I
Sbjct: 254 AEAISDKISKSDIKSRKDFRGVTTFTIDPADAKDFDDAISYQ-----RLPNGNIEMGVHI 308

Query: 309 ADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEMTM 368
           ADV+ YV+  + L+ EA  R  SVY  +R +PMLPE LSNGLCSL PH D+L   C   +
Sbjct: 309 ADVTHYVKPNTPLEKEAYDRATSVYLVDRTIPMLPERLSNGLCSLRPHEDKLTFSCVFEL 368

Query: 369 NKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVPDLKNLYNLY 428
           ++ GQ++ +     +IHS  R  Y +    ++    +EG        +   +L  L NL 
Sbjct: 369 DEDGQVLKHWIGRTIIHSDRRFAYEEAQENIDQ---QEG--------DFYSELTLLNNLA 417

Query: 429 KVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLAANVATAEFL 488
           K + + R  +GAI+FET E +    ++     +    R D HK+IEE ML AN A AEF+
Sbjct: 418 KKIRKRRFQQGAINFETVEVKFKLDDKGTPLGLMVKERKDIHKMIEEFMLLANKAVAEFV 477

Query: 489 ---QKHGVPALYRVHDGPPPERLEKLRAFLGELG--LSLHKGKDPSPKDYQALLASIAGR 543
               K     +YR+HD P  ERLE    F  + G  +S+ +    S      L+  I G+
Sbjct: 478 FNKNKGDDTFVYRIHDHPDLERLETFANFAKKFGHEVSITEATRVS-ATLNKLMGEIEGK 536

Query: 544 PDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSK 603
           P+ +L++ + +RS+++A Y+TE  GHFGL ++ YTHFTSPIRRYPD++VHR ++      
Sbjct: 537 PEQNLLEQLAIRSMAKARYTTEPKGHFGLAFKHYTHFTSPIRRYPDMMVHRLLQ------ 590

Query: 604 VDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEFMKDR 663
               H    G  +         D+   E      S  E+RA +A R  + + + E+M   
Sbjct: 591 ----HYLDGGKSA---------DKEAWEDKCIHSSEREKRAADAERASIKYKQVEYMALA 637

Query: 664 VGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGRSFRL 723
             + + G+I+ VT +G+FVE+T+   EG++ +  L  DYY FD  + RL G +  +   L
Sbjct: 638 EDKAYDGIISGVTEWGIFVEITETKCEGMIRLQDLEDDYYEFDEKNMRLIGAKNKKMITL 697

Query: 724 GDTIEVKVMRVDLDERKIDFEVSE 747
           GD + V+V+  D+D R ID E ++
Sbjct: 698 GDQVRVRVVNTDIDRRTIDLEFAD 721