Pairwise Alignments

Query, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

Subject, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

 Score =  403 bits (1035), Expect = e-116
 Identities = 277/787 (35%), Positives = 417/787 (52%), Gaps = 60/787 (7%)

Query: 22  IPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALRRRLRAMERDGQL-----IYTR 76
           +PSRE++L+ +AD  + A++ E+AK FGL  E++I  L+  L+ +E DG +       TR
Sbjct: 36  VPSREVLLKFIADHPQQASKREIAKAFGLKGENRI-VLKALLKELEVDGMVHKSRKSLTR 94

Query: 77  RGTYAPVDKLDLICGRVSGHRDGFGFLI--PDDGSEDLFLSPSQMRLVFDGDRGL-ARVS 133
            G   PV  LD+        RD  G LI  P +  ED+  +P+ +      DRG  A  +
Sbjct: 95  PGGLPPVTVLDITT------RDKDGELIGRPAEWPEDMGAAPAVLIRQSSQDRGKKAPAA 148

Query: 134 GVDRR------GRREGV-------LVEVISRAHESVVGRYFE-EGGIGYVTPDNPKIQQE 179
           G+  R        ++ V       +V++I R   +++G + + EGG G + P + +  +E
Sbjct: 149 GLGDRILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRR-GEE 207

Query: 180 VLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPH 239
           +++     G AK G  +E++ +         +  V+ V+G+  +      +A+ ++ IPH
Sbjct: 208 MVIDPDGVGDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPH 267

Query: 240 VWPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFS 299
           ++P +V+ EA   ++         R D R LP +TID  DA+D DDAVY E L       
Sbjct: 268 IFPPNVLAEADAAKAAT----MSHREDWRDLPLITIDPADAKDHDDAVYAE-LDPSPDNP 322

Query: 300 GGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDR 359
            G  + VAIADVS YVR G+ LD EA +RGNSVYFP+RVVPMLPE +SN LCSL   VDR
Sbjct: 323 DGVIVTVAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDR 382

Query: 360 LAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVP 419
            A+   MT +K G+   + F+  ++ S A+L+Y +  + ++ +   +   L E      P
Sbjct: 383 PALAVRMTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGNPDDKTGTLLE------P 436

Query: 420 DLKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLA 479
            LK L++ Y+V+   R  R  ++ +  E +I    +  + ++    R DAHKLIEE M+ 
Sbjct: 437 ILKPLWHAYEVMKRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQ 496

Query: 480 ANVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLAS 539
           ANVA AE L+      +YRVHD P   + E LR FLG +G+S+ KG       +  +LA 
Sbjct: 497 ANVAAAETLETKKQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILAR 556

Query: 540 IAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSI 599
               P   ++  ++LRS SQA+YS EN GHFGLN   Y HFTSPIRRY DL+VHRA+   
Sbjct: 557 ALDTPHQIMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRAL--- 613

Query: 600 IRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEF 659
                        G++ + +  I P +E TL+ +  + S  ERRA  A RD VN L    
Sbjct: 614 ------------VGSLGLGEGGITPQEEATLDDIAAEISTFERRAMAAERDTVNRLIAHH 661

Query: 660 MKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGR 719
           + +RVGE F G +  VT  GLFV L     +G V +S L  DY+ +D  H  L GE+TG 
Sbjct: 662 LSERVGEEFEGRVGGVTKAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQALTGEKTGL 721

Query: 720 SFRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKAT 779
            ++LGDT++V++         + FE+       P+G +   +   A +   +P  +    
Sbjct: 722 GYQLGDTVQVRLAEAVPLAGALRFEMLSPGRKMPVGSR---SFHKAGRRTSRPGAKPGTR 778

Query: 780 PKPRSRK 786
           P PR R+
Sbjct: 779 P-PRGRR 784