Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 307 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  339 bits (870), Expect = 4e-98
 Identities = 171/301 (56%), Positives = 223/301 (74%), Gaps = 1/301 (0%)

Query: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVE 64
           F QQLVNGLT+GS Y LIAIGYTMVYGIIGMINFAHGEVYMI +Y+A I+LA LA  G+ 
Sbjct: 7   FFQQLVNGLTIGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVAFIALAGLAMMGIH 66

Query: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG 124
           S PLLM    L +IVVT  YG++IER+AY+PLR S RL PLISAIG+S+ LQN   +SQ 
Sbjct: 67  SLPLLMTAAFLASIVVTSAYGYSIERVAYRPLRGSNRLIPLISAIGMSIFLQNTVLLSQD 126

Query: 125 ARQQGVPTLLEGAMRVEVGSGF-VQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRAT 183
           ++ + +P L+ G+     G    V ++Y +I + V   V M  LT  I  ++LGR CRA 
Sbjct: 127 SKDKSIPNLIPGSFSFGPGGAEEVLISYMQILVFVVTLVAMLGLTLFISRSRLGRACRAC 186

Query: 184 QQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAV 243
            +D KMA++LGINT+ +I+  FVIGA +AA+A VL++M YG  +  AGF++G+KAFTAAV
Sbjct: 187 AEDIKMANLLGINTNNIIALTFVIGAALAAVAAVLLSMQYGVINPNAGFLVGLKAFTAAV 246

Query: 244 LGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGRPLVAK 303
           LGGIGS+PGAMLGG++LG++E+  + +    YKDV +F LLV++L+FRP G+LGRP V K
Sbjct: 247 LGGIGSIPGAMLGGLVLGVAEAFGADIFGDQYKDVVAFGLLVLVLLFRPTGILGRPEVEK 306

Query: 304 V 304
           V
Sbjct: 307 V 307