Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  163 bits (413), Expect = 4e-45
 Identities = 96/294 (32%), Positives = 170/294 (57%), Gaps = 15/294 (5%)

Query: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVE 64
           FLQ  + G+++G +YG IA+G+ ++Y    ++NFA GE  M    L A++  LL   G+ 
Sbjct: 4   FLQFALAGISVGVIYGAIAVGFNIIYNSSHVVNFAQGEFVM----LGAMTCVLLLGAGLP 59

Query: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG 124
            +PL         +  T V G  +  +A +P +N+  +  +I  IG S++++  A+   G
Sbjct: 60  -YPL----AAFLAVAATAVVGLLLYDVAIRPAKNAPVIMLIIITIGASILIRGLARPIFG 114

Query: 125 ARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYV-IKYTKLGRMCRAT 183
                +P ++ GA  + +G   VQ    +  I+VA  +G  LL ++ ++ T LG+   A 
Sbjct: 115 TGVASLPAVVPGAS-ISIGGAVVQ---PQSLIVVAGTLGAVLLLWLFMRKTLLGKGLIAA 170

Query: 184 QQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAAV 243
             D   A+++GI    ++   F+I A + A++G+LI       ++  G ++ +K F AA+
Sbjct: 171 SSDPMAATLMGIRVSNIVRLSFLISASLGAVSGILIAP-IALANYEMGTLLALKGFAAAI 229

Query: 244 LGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLG 297
           LGG+GS+PGA+LGG+++G+SE++ +G I+SDYKD  +F ++++ L F P GL+G
Sbjct: 230 LGGMGSIPGAVLGGLLVGLSEAMSAGYISSDYKDATAFVVIMLALFFFPNGLVG 283