Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 293 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  175 bits (443), Expect = 1e-48
 Identities = 106/295 (35%), Positives = 169/295 (57%), Gaps = 16/295 (5%)

Query: 7   QQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVESF 66
           QQLVN L+LG VY L A+G+T+++G++G+IN +HG V+M+ AY AA       +  V   
Sbjct: 4   QQLVNALSLGCVYALFALGFTLIFGVLGVINLSHGAVFMVGAYAAA------EFMRVSGM 57

Query: 67  PLLMLGTLLFTIVVTGVYGFTIERIAYKPL--RNSTRLAPLISAIGISLILQNYAQISQG 124
           PL +   L F     GV GF ++ +  KPL  RN+  L P+I+ IG+++IL N  Q   G
Sbjct: 58  PLWV--GLPFAFAFCGVLGFLVDVLVLKPLRKRNAPHLIPMIATIGVAIILNNGIQGIFG 115

Query: 125 ARQQGVP--TLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRA 182
           A     P  T+ + A+   V +G + +T  ++ I++A+FV MG+L   ++ T+LGR  RA
Sbjct: 116 AENLRFPPGTIPDDAL---VFAG-IHVTVLELGIVLASFVLMGVLMLSLQRTQLGRALRA 171

Query: 183 TQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAA 242
             +  K A ++G+N + +      + A +  +AGVLI +         G  +  K     
Sbjct: 172 IAESPKAAYLVGVNVEGLFYLTSFVAAGLGGVAGVLIGLYSNALFPLMGQPMLEKGIAVI 231

Query: 243 VLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLG 297
           +LGG+G + GA+LGG+ LG +E L    + S+ +D  +F LL ++L+ RP+GL G
Sbjct: 232 ILGGMGDIRGALLGGLFLGFAEVLSVAYVGSNMRDAVAFGLLFLVLLVRPKGLFG 286