Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  138 bits (348), Expect = 1e-37
 Identities = 90/303 (29%), Positives = 165/303 (54%), Gaps = 19/303 (6%)

Query: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVES 65
           LQ L++G+  G +YGLIA+G+ ++Y     ++FA G++ M+ A+ A   ++L   FG+  
Sbjct: 4   LQLLLSGIAQGCIYGLIALGFVLIYKATETVSFAQGDLMMLGAFGAFAGMSL---FGMPF 60

Query: 66  FPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQGA 125
           +   +L      +V    +G  +E +  + +    + + ++  IGI+ + +    +  G 
Sbjct: 61  WLAAILA-----VVAMAAFGVLLELVVIRSILGQPQFSIVMLTIGIAYVARGVITMVPGI 115

Query: 126 RQQGVPTLLEGAMRV-EVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRATQ 184
             +     +    ++ ++G   V L   ++ I++A  V  GLL  + +Y+KLG   +A+ 
Sbjct: 116 GTETHTLAVPYKDQIWKLGELVVNLE--QLAIIIATAVLCGLLFAMFRYSKLGIAMQASS 173

Query: 185 QDRKMASILGINTDRVISYVFVIGAVMAALAGVL---ITMNYGTFDFYAGFIIGIKAFTA 241
           Q++  A  +GI   R+   V+ + A +AA+AG+L   IT  +    F     IG+KAF A
Sbjct: 174 QNQLAAYYMGIPVKRLNGLVWGLAAAVAAIAGMLLAPITFVHANMGF-----IGLKAFPA 228

Query: 242 AVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGRPLV 301
           AV+GG GSLPGA++GG+++GI ES     +   +KD   + +++++L+ +P GL G  L 
Sbjct: 229 AVVGGFGSLPGAIVGGLVIGIVESFAGFYLPDGFKDTAPYIVVLLMLMIKPNGLFGEKLR 288

Query: 302 AKV 304
            KV
Sbjct: 289 KKV 291