Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 300 a.a., Urea ABC transporter, permease protein UrtB from Variovorax sp. SCN45

 Score =  135 bits (339), Expect = 2e-36
 Identities = 92/296 (31%), Positives = 156/296 (52%), Gaps = 11/296 (3%)

Query: 4   IFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGV 63
           I + Q+ NG++L ++  L+AIG  +V+G++G+IN AHGE+  + AY+  ++     +F  
Sbjct: 5   IAVMQVFNGVSLFTILLLMAIGLAIVFGLMGVINMAHGELMALGAYMTYLAARFFEHFAP 64

Query: 64  ESFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQ 123
               L +   + F   VT  +G+ +ER  +        L  L++  G+SL+LQ   +   
Sbjct: 65  GFMDLYLFAAIPFAFAVTFAFGYVLER-GFIRFFYDRPLDTLLATWGLSLMLQQAYRSIF 123

Query: 124 GARQQGVP--TLLEGAMRVEVGSGFVQLTYTKIFIL-VAAFVGMGLLTYVIKY-TKLGRM 179
           GA++  VP  + L GA     G   +QL   +IFI+ + A V  G+  Y++ Y T  G  
Sbjct: 124 GAQEVSVPLASWLAGAWEPTAG---IQLPLNRIFIVGLTALVATGV--YLLLYRTSWGLK 178

Query: 180 CRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAF 239
            RA  Q+R +A  +GI+T RV +  F +G+ +A +AG + TM  G+ +   G +  + +F
Sbjct: 179 VRAVTQNRAIAGAVGIDTHRVDAMTFALGSGLAGIAGAVFTM-IGSTNPGTGQLYIVDSF 237

Query: 240 TAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGL 295
              V GG+ SL G  L G  +  S++    L++          L++++L FRP GL
Sbjct: 238 IVVVFGGVQSLVGTALSGFSIAQSQTWLEYLMSGSMAKATILLLVIVVLYFRPNGL 293