Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 609 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  193 bits (490), Expect = 1e-53
 Identities = 105/296 (35%), Positives = 173/296 (58%), Gaps = 15/296 (5%)

Query: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVE 64
           F    VNGL +G++Y L+A+G  +++G+  +INFAHG VY + AY+   S+  L      
Sbjct: 6   FFDYTVNGLIIGNIYALLAVGLALIFGVSHLINFAHGSVYTVGAYIGWASITYL------ 59

Query: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG 124
             PL +  T+   ++ +G  G  IER+  +PL+ + R+APL++ IGIS +L    Q+   
Sbjct: 60  HTPLPV--TIALVVLGSGALGMLIERVGLRPLQGAARIAPLLATIGISFVLDILVQLVFS 117

Query: 125 ARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAF--VGMGLLTYVIKYTKLGRMCRA 182
              + +PT L    R+ +G+G    T   + IL+A        +L   +++TKLG   RA
Sbjct: 118 PDPRSLPTQLPD-WRLRIGTG----TIGALDILIAGIGIASAAVLFGFLRFTKLGWAVRA 172

Query: 183 TQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAA 242
           T QDR  A  +G++ DRV   VF I A +  L+G+L+ M Y        F   +K   A 
Sbjct: 173 TAQDRDAAQQMGVDVDRVNQTVFAIAAALGGLSGLLVGMYYNNISPAMSFQATLKGVVAT 232

Query: 243 VLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGR 298
           V+GG+G++PGA++G ++LG+ ES    ++ + Y+++F+F+LL++IL+++P GL GR
Sbjct: 233 VVGGVGNVPGAIVGSLLLGLIESYGVAILGTPYRNLFAFALLLVILVWKPNGLFGR 288



 Score = 91.7 bits (226), Expect = 4e-23
 Identities = 78/296 (26%), Positives = 137/296 (46%), Gaps = 29/296 (9%)

Query: 9   LVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVESFPL 68
           L+  LT   +YG +A+  T+V G IG I+  H  +  I AY +++ +  L          
Sbjct: 334 LLQTLTNAWLYGALALSLTLVAGTIGQISLGHAGLLAIGAYASSLLVLDLH--------- 384

Query: 69  LMLGT-LLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG-AR 126
           L +GT ++   ++T + G  +   A++   +   +A L     ++L + N+  ++ G   
Sbjct: 385 LPVGTGIVLAGILTSLIGTALIFPAFRLRGHYVSIATLGIGEIVALTILNWESLTHGPIG 444

Query: 127 QQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRATQQD 186
             G+P L                ++        A V + LL + +  + LGR  RA ++D
Sbjct: 445 VSGIPPLSLFGRDASSNEAIYWASF-------GAMVLLALLQWRLLRSHLGRTFRAVRED 497

Query: 187 RKMASILGINTDRVISYVFVIGAVMAALAGVLIT-----MNYGTFDFYAGFIIGIKAFTA 241
              A   G++ DR  +  F  G   A ++G         +N+ TF    G  I I A T 
Sbjct: 498 EVAARAYGVSPDRYKALAFGFGGFAAGVSGAFTAHMYSYINHETF----GSQISILALTM 553

Query: 242 AVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLG 297
            +LGG+G++ GA+LG + L     LF   + ++Y+ +     L++++ FRPQGLLG
Sbjct: 554 VILGGLGNISGALLGAVALVSLPELFR--VTAEYRMLIYGVALLLLIRFRPQGLLG 607