Pairwise Alignments

Query, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

Subject, 291 a.a., branched-chain amino acid ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score =  157 bits (398), Expect = 2e-43
 Identities = 95/301 (31%), Positives = 161/301 (53%), Gaps = 19/301 (6%)

Query: 1   MDGIFLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAY 60
           M   FLQ L +GLT G++Y L  +G+ ++Y    +INFA GE  MI     A  +A    
Sbjct: 1   MFAAFLQYLFSGLTSGAIYALAGLGFAIIYNASHVINFAQGEFIMIGGMATATMVAA--- 57

Query: 61  FGVESF---PLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQN 117
            GV  +   PL M  ++L         G  +E+ A +P RN+  +  +I  IG S+ ++ 
Sbjct: 58  -GVPIYLAIPLAMAASMLV--------GVAMEKFAIEPARNADVVTIIIITIGASIFMRG 108

Query: 118 YAQISQGARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLG 177
            AQ+        +P          +G+    L    +++   + V + LL Y    T  G
Sbjct: 109 AAQLIWDKEFHSLPAFSGETPIAVMGA---TLMPQSLWVFGISAVAIALLWYFFNRTMFG 165

Query: 178 RMCRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIK 237
           +    T  +R  A ++G+   RV+   F + A++ A+ G+++T    T ++ AG ++G+K
Sbjct: 166 KAMLGTSHNRLAAQLVGVAVKRVLLASFALSALLGAVGGIVVTPITFT-NYEAGIMLGLK 224

Query: 238 AFTAAVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLG 297
            F+AAVLGG+G+  GA++GG+I+GI+E++ SG ++S YKD  +F +++ +L F P GL G
Sbjct: 225 GFSAAVLGGLGNGTGAIIGGLIVGIAEAMASGYLSSAYKDAIAFIIILFVLFFMPSGLFG 284

Query: 298 R 298
           +
Sbjct: 285 K 285