Pairwise Alignments

Query, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

Subject, 643 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  125 bits (314), Expect = 4e-33
 Identities = 83/309 (26%), Positives = 155/309 (50%), Gaps = 25/309 (8%)

Query: 111 ALIVIAIVFPIFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLA 170
           AL++ A+      + Y + ++I  LI  L    L+ ++G AG+   G+ A++ +GAYG A
Sbjct: 330 ALMLAALPLLTVNSPYTMVLMIDLLIAALFATSLHFIMGPAGMHSFGHAAYFGLGAYGAA 389

Query: 171 LGYQYLGLGFWSVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLS 230
           L  + L L     L +A + AAL   + G+  +R+ G YLA++TL F +I   +   W S
Sbjct: 390 LLVRSLHLPMEVALLVAPVVAALGALVYGWFAVRLSGVYLAMLTLAFAQITWAITYQWDS 449

Query: 231 FTGGPNGMPAPSPTFFGLEFGRRAKDGGVPIHEFFGFEYNASLKFVFIYAVLFMVVLAVL 290
           FTGG NG+    P+ +                         S K  + +  L +V   V 
Sbjct: 450 FTGGSNGLTGVWPSEW------------------------LSNKQAYYWLTLVLVGAGVW 485

Query: 291 YIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFFATYQGF 350
           +++ R+   P G A  A R+  +   ++G++   ++ +AF +  + AGLAG  +A  +G 
Sbjct: 486 WLR-RVLFSPFGYALRAGRDSVLRADAIGIDVKRMQWAAFVIAGTVAGLAGALYAFSKGS 544

Query: 351 VNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLFGVLMVL 410
           ++P S +  +S   L +V+LGG+ +  G V+ A   T   + +   ++Y   + G ++++
Sbjct: 545 ISPESLSVGKSVDGLVMVLLGGIQTLAGPVVGAVTFTWLHDTVARNTDYWRAMLGAIILI 604

Query: 411 MMIWRPRGL 419
           +++  P+G+
Sbjct: 605 LVLLFPQGI 613



 Score = 75.5 bits (184), Expect = 5e-18
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 33/291 (11%)

Query: 143 GLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLG--LGFWSVLPLAAIAAALAGCILGF 200
           GL+++ G+  +++  + +F+ +G Y        LG  LGFW  L +AA+A  + G ++  
Sbjct: 26  GLSLIFGVTRIVNFAHGSFFMVGIYVAYTLVDKLGSSLGFWPALLIAAVAVGVLGALIEV 85

Query: 201 PVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMPAPSPTFFGLEFGRRAKDGGVP 260
            +LR       +  L     + LV+ + + +  GP+ +  P     GL+       G V 
Sbjct: 86  VLLRRIYKAPELFQLLATFALVLVIKDAVLWLWGPDELLGPRAP--GLK-------GSV- 135

Query: 261 IHEFFGFEYNASLKFVFIYAVLFMVVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGL 320
             E  G ++ +   F+ +   L + ++ +L     LTR   G    A  +D     ++G+
Sbjct: 136 --EILGRQFPSYDLFLIVVGPLVLGLVWLL-----LTRTRFGTLVRAATQDREMVSALGV 188

Query: 321 NHVLVKLSAFTLGASTAGLAGVFFATYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVV 380
           N   +  + F LGA  AGL G      +            +A +  +VV+GGMGS  G  
Sbjct: 189 NQAWLFTAVFALGALLAGLGGALQLPREPATLEMDLNTIGAAFV--VVVVGGMGSLPGAY 246

Query: 381 IAAFVLTVAPELL------------RSFSEYRVLLFGVLMVLMMIWRPRGL 419
           +AA ++     +              SFS+  +++  ++M ++++WRP GL
Sbjct: 247 VAALLIAEIKAVCIWLGVVQIFGIDVSFSKLTLMVDFLVMAIVLVWRPWGL 297