Pairwise Alignments

Query, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

Subject, 358 a.a., ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  159 bits (402), Expect = 1e-43
 Identities = 102/319 (31%), Positives = 159/319 (49%), Gaps = 34/319 (10%)

Query: 112 LIVIAIVFPIFANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLAL 171
           L+   +  P   ++Y L  +   LIY ++GLGL ++ G  G   +G+ AF   GAY   +
Sbjct: 28  LVAFLLAAPWVIDEYWLAQLTFVLIYGIVGLGLMLLAGFTGQFSIGHAAFLGAGAYTQGV 87

Query: 172 GYQYLGLGFWSVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSF 231
               LG+ F   L  AA  +A  G ++  P LR+ G YL I TL FG I+  V   W S 
Sbjct: 88  -LTNLGVPFPLALVAAAALSAAVGVVVALPALRVKGIYLGIATLSFGFIVEEVFARWESV 146

Query: 232 TGGPNGMPAPSPTFFGLEFGRRAKDGGVPIHEFFGFEYNASLKFVFIYAVLFMVVLAVLY 291
           TGG  G+   SP  FG   G  + +G                   F +  L + VLA L 
Sbjct: 147 TGGNAGLHVKSPQLFGWSLG--SGEG-------------------FYFLCLVVAVLATLG 185

Query: 292 IKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFFATYQGFV 351
           I + L R P GRA+ A+R+ EI+ +SMG++    K  +F + A+ AGL G  +A    F+
Sbjct: 186 ILN-LLRSPTGRAFVAIRDSEISAQSMGIHLARYKTMSFAISAALAGLGGALYAHKLSFI 244

Query: 352 NPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEY-----------R 400
           +P  F+  +S  +L +VV+GG+GS  G  + A  L   P+L+    ++           +
Sbjct: 245 SPDQFSILQSIDLLLMVVIGGLGSVHGAFLGAIFLIAMPQLISIGKDWLPEAIGQAPGLQ 304

Query: 401 VLLFGVLMVLMMIWRPRGL 419
            L++GV+++  +++ P GL
Sbjct: 305 GLVYGVVLIAFVLFEPLGL 323