Pairwise Alignments

Query, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

Subject, 609 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  174 bits (442), Expect = 5e-48
 Identities = 113/314 (35%), Positives = 164/314 (52%), Gaps = 22/314 (7%)

Query: 108 IIPALIVIAIVFPIF-ANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGA 166
           ++ AL   A   P+F  + YLL  +    +Y  L L L +V G  G + LG+    AIGA
Sbjct: 314 LLLALFAAAAALPLFDPSPYLLQTLTNAWLYGALALSLTLVAGTIGQISLGHAGLLAIGA 373

Query: 167 YGLALGYQYLGLGFWSVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLN 226
           Y  +L    L L   + + LA I  +L G  L FP  R+ G Y++I TLG GEI+ L + 
Sbjct: 374 YASSLLVLDLHLPVGTGIVLAGILTSLIGTALIFPAFRLRGHYVSIATLGIGEIVALTIL 433

Query: 227 NWLSFTGGPNGMPAPSPTFFGLEFGRRAKDGGVPIHEFFGFEYNASLKFVFIYAVLFMVV 286
           NW S T GP G+    P      FGR A          FG                 MV+
Sbjct: 434 NWESLTHGPIGVSGIPPLSL---FGRDASSNEAIYWASFGA----------------MVL 474

Query: 287 LAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFFAT 346
           LA+L  + RL R  +GR + A+REDE+A R+ G++    K  AF  G   AG++G F A 
Sbjct: 475 LALL--QWRLLRSHLGRTFRAVREDEVAARAYGVSPDRYKALAFGFGGFAAGVSGAFTAH 532

Query: 347 YQGFVNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLFGV 406
              ++N  +F    S L L +V+LGG+G+  G ++ A  L   PEL R  +EYR+L++GV
Sbjct: 533 MYSYINHETFGSQISILALTMVILGGLGNISGALLGAVALVSLPELFRVTAEYRMLIYGV 592

Query: 407 LMVLMMIWRPRGLI 420
            ++L++ +RP+GL+
Sbjct: 593 ALLLLIRFRPQGLL 606



 Score = 75.5 bits (184), Expect = 4e-18
 Identities = 69/304 (22%), Positives = 137/304 (45%), Gaps = 37/304 (12%)

Query: 126 YLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWSVLP 185
           Y +  +I+G IY LL +GL ++ G++ L++  + + Y +GAY       YL       + 
Sbjct: 9   YTVNGLIIGNIYALLAVGLALIFGVSHLINFAHGSVYTVGAYIGWASITYLHTPLPVTIA 68

Query: 186 LAAIAAALAGCILGFPVLRMHGDYLAIV----TLGFGEIIRLVLNNWLSFTGGPNGMPAP 241
           L  + +   G ++    LR       I     T+G   ++ +++   L F+  P  +P  
Sbjct: 69  LVVLGSGALGMLIERVGLRPLQGAARIAPLLATIGISFVLDILVQ--LVFSPDPRSLPTQ 126

Query: 242 SPTFFGLEFGRRAKDGGVPIHEFFGFEYNASLKFVFIYAVLFMVVLAVLYIKHRLTRMPV 301
            P     ++  R   G +   +              + A + +   AVL+   R T++  
Sbjct: 127 LP-----DWRLRIGTGTIGALDI-------------LIAGIGIASAAVLFGFLRFTKL-- 166

Query: 302 GRAWEALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFFATYQGFVNPSSFTFFES 361
           G A  A  +D  A + MG++   V  + F + A+  GL+G+    Y   ++P + +F  +
Sbjct: 167 GWAVRATAQDRDAAQQMGVDVDRVNQTVFAIAAALGGLSGLLVGMYYNNISP-AMSFQAT 225

Query: 362 ALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSF------SEYRVLLFGVLMVLMMIWR 415
              +   V+GG+G+  G ++ + +L     L+ S+      + YR L    L++++++W+
Sbjct: 226 LKGVVATVVGGVGNVPGAIVGSLLL----GLIESYGVAILGTPYRNLFAFALLLVILVWK 281

Query: 416 PRGL 419
           P GL
Sbjct: 282 PNGL 285