Pairwise Alignments

Query, 435 a.a., High-affinity branched-chain amino acid transport system permease protein BraE from Pseudomonas putida KT2440

Subject, 315 a.a., branched-chain amino acid ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score =  167 bits (424), Expect = 3e-46
 Identities = 98/313 (31%), Positives = 163/313 (52%), Gaps = 23/313 (7%)

Query: 109 IPALIVIAIVFPI-FANKYLLTVVILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAY 167
           + AL ++  + P+ F+N Y   V +  +   +L +GLN+++G AG + LG+  F+A+GAY
Sbjct: 11  LAALAIVITLAPLGFSNSYFYDVGVNAMFNAILCVGLNLLIGYAGQISLGHAGFFALGAY 70

Query: 168 GLALGYQYLGLGFWSVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNN 227
           G  +  +  G+     L L+A    +   ++  P+L++ G YLA+ TLG G II +VL  
Sbjct: 71  GSGILTERYGVPAIGALVLSASVVGILAFVVARPILKLKGHYLAMATLGIGIIIHIVLKT 130

Query: 228 WLSFTGGPNGMPAPSPTFFGLEFGRRAKDGGVPIHEFFGFEYNASLKFVFIYAVLFMVVL 287
               TGGP+GM   +                    +  GF       + ++  VL  +VL
Sbjct: 131 EAGITGGPDGMSLGN-------------------FKMLGFTIKGDQMWYWVTGVL--LVL 169

Query: 288 AVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTLGASTAGLAGVFFATY 347
           AV ++   L   PVGRA  A+   E+    +G++    K+  F + A  A + G  FA  
Sbjct: 170 AV-WLSLNLIESPVGRALRAVHGSEVGAEVVGVDTSSYKVLVFVVSAVFASVVGSLFAHK 228

Query: 348 QGFVNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLFGVL 407
            GF+ P   +FF S  ++ +VVLGGM S  G +I A +LT+ P++L +  +Y  ++ G +
Sbjct: 229 NGFITPDISSFFHSVELVTMVVLGGMASIYGALIGAVILTLLPQVLAAVEQYEAMILGAI 288

Query: 408 MVLMMIWRPRGLI 420
           M+  MI+ P+GL+
Sbjct: 289 MMGTMIFMPKGLL 301



 Score = 26.6 bits (57), Expect = 0.001
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 16/106 (15%)

Query: 59  WLVGGVMVGRFLLSLFLQTAPGQRMLLGFDSGGSGVHVTAPDYKS-RLRYIIPALIVIAI 117
           W+ G ++V    LSL L  +P  R L        G  V   D  S ++   + + +  ++
Sbjct: 161 WVTGVLLVLAVWLSLNLIESPVGRALRAVHGSEVGAEVVGVDTSSYKVLVFVVSAVFASV 220

Query: 118 VFPIFANK---------------YLLTVVILGLIYVLLGLGLNIVV 148
           V  +FA+K                L+T+V+LG +  + G  +  V+
Sbjct: 221 VGSLFAHKNGFITPDISSFFHSVELVTMVVLGGMASIYGALIGAVI 266