Pairwise Alignments

Query, 319 a.a., Curved DNA-binding protein from Pseudomonas putida KT2440

Subject, 385 a.a., Chaperone protein DnaJ from Sphingobium sp. HT1-2

 Score =  164 bits (415), Expect = 3e-45
 Identities = 125/360 (34%), Positives = 168/360 (46%), Gaps = 78/360 (21%)

Query: 5   DYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKE-RDAEEKFKEANEAYEVLGDAQKRA 63
           DYY++L VE TAD  AIK+AYRKLA KYHPD +    D+E KFK  +EAY+ L D QKRA
Sbjct: 12  DYYELLEVERTADGAAIKSAYRKLAMKYHPDKTGGCTDSEAKFKAVSEAYDCLKDPQKRA 71

Query: 64  EFDEIRKYGGQHGRPFQAPPGWESRGGGGGFEGG-----DFSDFFSSIFGGRSAGGNPFG 118
            +D   ++G  H    Q   G    GGGGGF GG     D  D F +IFG    GG   G
Sbjct: 72  AYD---RFG--HAAFKQQQQG----GGGGGFHGGAGGFSDLGDIFETIFGQAGFGGG--G 120

Query: 119 GARQQQRSAGRRGQDVELELAVFLEETLSKESKQISFQV----PQTNAMGQRTGFTTKT- 173
             RQQQ    RRG D+  +L + L+E    +  +I  +V          G + G   KT 
Sbjct: 121 SGRQQQ----RRGADLRYDLEISLDEAYHGKKTEIQIEVSAACDSCEGSGAQPGTGVKTC 176

Query: 174 --------------------------------------------------LNVRIPAGVT 183
                                                             L+V IPAGV 
Sbjct: 177 GTCHGHGQVRAQQGFFVVERTCPSCHGAGQVIESPCKSCRGEGRVDRPKTLSVNIPAGVD 236

Query: 184 DGERIRLKGQGAPGSGGGANGDLFLTIRMAPHPLFDVEGHDLIITVPLAPWEAALGAKVA 243
           +G RIRL G+G  G+ G   GDL++ + +  H +F+ +G  L   VP++   AALG  + 
Sbjct: 237 EGTRIRLSGEGEAGARGAPAGDLYIFLHVKRHSIFERDGTTLFCRVPVSITTAALGGMIE 296

Query: 244 VPTLDG-KINLTIRPDSQSGQRLRVPGKGLANKQGE-RGNLYAQLKVVMPPASDESAREL 301
           VP LDG +  + I    QSG++++  G G+    G  +G+L  Q+ V  P       REL
Sbjct: 297 VPGLDGQRHEIKIPSGIQSGKQIKQRGAGMPVLNGRGQGDLVVQVDVETPTKLTAKQREL 356