Pairwise Alignments

Query, 319 a.a., Curved DNA-binding protein from Pseudomonas putida KT2440

Subject, 306 a.a., curved DNA-binding protein from Escherichia coli ECRC62

 Score =  333 bits (854), Expect = 3e-96
 Identities = 177/322 (54%), Positives = 221/322 (68%), Gaps = 20/322 (6%)

Query: 1   MDFKDYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQ 60
           M+ KDYY I+GV+PT D K IK AYR+LARKYHPDVSKE DAE +FKE  EA+EVL D Q
Sbjct: 1   MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 60

Query: 61  KRAEFDEIRKYGG--QHGRPFQAPPGWESRGGGGGFEGGDFSDFFSSIFGGRSAGGNPFG 118
           +RAE+D++ ++    Q  R F         G G  F   DF D FSSIFG          
Sbjct: 61  RRAEYDQMWQHRNDPQFNRQFH-------HGDGQSFNAEDFDDIFSSIFGQH-------- 105

Query: 119 GARQQQRSAGRRGQDVELELAVFLEETLSKESKQISFQVPQTNAMGQRTGFTTKTLNVRI 178
            ARQ ++    RG D+E+E+AVFLEETL++  + IS+ +P  NA G       KTLNV+I
Sbjct: 106 -ARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKI 164

Query: 179 PAGVTDGERIRLKGQGAPGSGGGANGDLFLTIRMAPHPLFDVEGHDLIITVPLAPWEAAL 238
           PAGV +G+RIRLKGQG PG  GG NGDL+L I +APHPLFD+ G DL I VP++PWEAAL
Sbjct: 165 PAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAAL 224

Query: 239 GAKVAVPTLDGKINLTIRPDSQSGQRLRVPGKGLANKQGERGNLYAQLKVVMPPASDESA 298
           GAKV VPTL   I LTI P SQ+GQRLRV GKGL +K+ + G+LYA LK+VMPP  DE+ 
Sbjct: 225 GAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK-QTGDLYAVLKIVMPPKPDENT 283

Query: 299 RELWTKLSE-KAAFNPRTQWSK 319
             LW +L++ +++F+PR  W K
Sbjct: 284 AALWQQLADAQSSFDPRKDWGK 305