Pairwise Alignments

Query, 421 a.a., putative Urea ABC transporter, periplasmic protein from Pseudomonas putida KT2440

Subject, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

 Score = 59.3 bits (142), Expect = 2e-13
 Identities = 91/362 (25%), Positives = 142/362 (39%), Gaps = 41/362 (11%)

Query: 12  LSASIAAMGLSWSIQAAETIKVGILHSLSGTMAISETSLKDMALMTIEQ----INAKGGV 67
           L A++   G++    AA+TIK+GI    +G +    T   DM  M  +Q    INAKGGV
Sbjct: 11  LFAAMVLAGVAGHSFAADTIKIGIAGPKTGPV----TQYGDMQFMGAKQAIADINAKGGV 66

Query: 68  NGKMLEPVVVDPASNWPLFAEKSRQLLTQDKVAVVFGCWTSVSRKSVLPVFEELNGLLFY 127
           +GKMLE    D A + P  A      +  D V  V G   S S +    ++E+   ++  
Sbjct: 67  DGKMLEAKEYDDACD-PKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEGVIMIT 125

Query: 128 PVQYEGEEMSPN---VFYTGAAPNQQAIPAVEYLMSEDGGSAKRFFLLGTDYVYPRTTNK 184
           P     E  +     +F T    + Q   A  Y+   D    K   +L     Y      
Sbjct: 126 PAATSPEITARGYKLIFRTIGLDSAQGPAAGNYI--ADHVKPKIVAVLHDKQQYGEGIAT 183

Query: 185 ILRAFLHSKGVADKDIEEVYTPFGHADYQTIVASIKKFSA-----GGKTAVISTVNGDSN 239
            ++  L  KG      E +    G  D+ +I+  +K+ +      GG    +  +     
Sbjct: 184 AVKQTLEKKGTKVAVFEGLNA--GDKDFSSIIQKLKQANVDFVYYGGYHPELGLI----- 236

Query: 240 VPFYKELANQGLKATDVPVVAFSVGEEELRGIDTKPLVGHLAAWNYFESVDNPVNQKFVA 299
               ++   +GL A  +      VG + +  I      G L         D P N+  V 
Sbjct: 237 ---LRQAKEKGLNAKFMG--PEGVGNDSISQIAQGASEGLLVTLPKSFDTD-PANKAIVE 290

Query: 300 DWKAYAKAKGLPGADKAVTNDPMEATYVGIHMWAQAVEKAKSTDVDKVREALAGQSFEAP 359
           +   +AK K  P      T   +   Y  I + A  ++ AKS D  KV EA+   +F+ P
Sbjct: 291 E---FAKNKQDP------TGPFVFPAYSAIEVIAGGIKAAKSEDTAKVAEAIHAGTFKTP 341

Query: 360 SG 361
           +G
Sbjct: 342 TG 343