Pairwise Alignments

Query, 468 a.a., D-alanine, beta-alanine, D-serine, glycine permease from Pseudomonas putida KT2440

Subject, 472 a.a., L-alanine and D-alanine permease (from data) from Pseudomonas simiae WCS417

 Score =  391 bits (1005), Expect = e-113
 Identities = 202/460 (43%), Positives = 287/460 (62%), Gaps = 12/460 (2%)

Query: 6   PIATDEPH--------LQRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMI 57
           P+    PH        L+R L  RHI+L+A+G  IG GLF+GS K I +AGP+I+  Y+I
Sbjct: 2   PVGNHLPHGETAQGGPLKRELGERHIRLMALGACIGVGLFLGSAKAIEMAGPAIMLSYII 61

Query: 58  IGFMLFFVMRAMGELLLSNLNYKSFIDFSADLLGPWAGYFTGWTYWFCWVVTGIADVVAI 117
            G  +  +MRA+GE+ + N    SF  ++ D LGP AG+ TGW YWF W+VT +A++ A+
Sbjct: 62  GGLAILVIMRALGEMAVHNPVAGSFSRYAQDYLGPLAGFLTGWNYWFLWLVTCVAEITAV 121

Query: 118 AAYTQFWFPDLPQWIPALTCVGLLLSLNLVTVKMFGELEFWFALVKIVAILGLVATGLYM 177
           A Y   WFPD P+WI AL  +  + S+NL+ VK FGE EFWFAL+KIV I+ +V  G+ +
Sbjct: 122 AVYMGVWFPDTPRWIWALAALISMGSINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGI 181

Query: 178 VITGFTSPSGRTAQLANLWNDGGMFPHGLMGFFAGFQIAVFAFVGIELVGTTAAEAKNPE 237
           +  GF +  G    ++NLW  GG  P+G+ G     Q+ +FA++G+E++G TA EAKNP+
Sbjct: 182 IAFGFGN-DGVALGISNLWAHGGFMPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQ 240

Query: 238 RTLPRAINSIPIRIIVFYVLALIAIMAVTPWRDVVPGKSPFVELFVLAGLPAAASIINFV 297
           +T+P AI S+  RI++FYV AL  I+++ PW ++    SPFV  F   G+  AA IINFV
Sbjct: 241 KTIPSAIGSVFWRILLFYVGALFVILSIYPWNEIGTQGSPFVMTFERLGIKTAAGIINFV 300

Query: 298 VLTSAASSANSGVFSTSRMLYGLSQEGDAPKAFEKLSSRSVPANGLYFSCTCLLLGAVLI 357
           V+T+A SS N G+FST RMLY L+Q G AP  F K SS  VP   L  S   LLLG +L 
Sbjct: 301 VITAALSSCNGGIFSTGRMLYSLAQNGQAPATFAKTSSNGVPRKALLLSIFALLLGVLLN 360

Query: 358 YLVPNVVEAFTLVTTVSAVLFMFVWTLILLSYLKYRKDRAALHQAS-NYKMPGGRFMCYV 416
           YLVP  V  F  VT+++    ++ W +ILL+ LK+RK  +   QA   Y+M       Y+
Sbjct: 361 YLVPEKV--FVWVTSIATFGAIWTWLMILLAQLKFRKSLSPAEQAGLKYRMWLYPVSSYL 418

Query: 417 CLSFFAFILVLLSLEADTRSALVVTPIWFVVLAVTYQLVR 456
            L+F   ++ L++   DTR AL V P++ V+L V + + +
Sbjct: 419 ALAFLLLVVGLMAYFPDTRIALYVGPVFLVLLTVLFYVFK 458