Pairwise Alignments

Query, 629 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

Subject, 662 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

 Score =  492 bits (1266), Expect = e-143
 Identities = 265/608 (43%), Positives = 383/608 (62%), Gaps = 28/608 (4%)

Query: 18  RKRVVVGAVAIMLLVCVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGV 77
           R+RVVV    ++    ++ ARL +LQ+++++  +  +E+NR  + PI P RG I DRNGV
Sbjct: 15  RRRVVVVGCVVLFGFGLIGARLAFLQVVRHEELADRAESNRTAIVPIVPNRGQILDRNGV 74

Query: 78  IVADNRPSFSLSMTRERAGNWQEVLDTIVEVLDLTADDRALFEKRMRQGRRPFEPVPILF 137
           ++A N  +++L +T  + G+    LD +  ++++T +DR  F KR+R+  R F+ +PI  
Sbjct: 75  VLASNYAAYTLEITPSKVGDLNAALDELDAIVEITPNDRRRF-KRLREDSRSFDSIPIRT 133

Query: 138 ELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDP---- 193
            L++E++AR A  ++R PG+E+ A+L R YP G   +H +GY+GRIN++E   ++     
Sbjct: 134 RLSDEEVARFAAQRYRFPGIEIKARLFRSYPHGEVASHVIGYIGRINQREKTAMEDWDEE 193

Query: 194 --VNYSGTHHIGKTGIERFYEAALHGQVGYEEVETNARGRVLRVLKRTDPKPGKDIVLSL 251
              NY GT +IGK GIE+ YE  LHGQ G E++ET+A GR +R L R    PG  ++LSL
Sbjct: 194 EQANYRGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLARHPATPGNTVMLSL 253

Query: 252 DIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISFKAYAELRDSID 311
           DIKLQ+  E   G RRGA+VA+DP+TGE+LA VS+P+FDPNLFV GI  +++A L +SID
Sbjct: 254 DIKLQKLVEDMFGERRGALVAIDPKTGEILAFVSKPTFDPNLFVEGIDHESWAALIESID 313

Query: 312 RPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNASSRVFDPGYYQLPNYDHKYRNWNRSG 371
           +PL NR LRG YPPGST KP +A+A L++G   A     DPG Y   ++  +    +R G
Sbjct: 314 KPLLNRALRGTYPPGSTYKPFMALAALETGARAADKIENDPGSY---SFGGRTFLSHRGG 370

Query: 372 DGWVDLDTAIMRSNDTYFYDLAHKMGIDRLSSYMNKFGIGQRVSLDMFEESAGLMPSREW 431
            G VD+  AI  S++TYFY LA++MG+D +  +M   G GQ   +D+  ES G++PS+ W
Sbjct: 371 LGGVDMHRAIQFSSNTYFYSLANEMGVDLIHEFMAPLGFGQFTGIDLLGESRGVLPSKAW 430

Query: 432 KRATRR----QAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGL 487
           KRA  R    + W  GET+ LGIGQGY   T LQLA A A +AN G+  RPHL + I+  
Sbjct: 431 KRAAYRRPDMKTWHAGETISLGIGQGYNSFTMLQLASANATLANGGMHYRPHLVRAIK-- 488

Query: 488 PPVDDNPMEDIVLRDKSDWAKVTHGME--QVMHNAR------GTARKAAAGAQYRIAGKS 539
               D   E+IV + +     + +  +   V+ NA       GT  +  AGA Y  AGK+
Sbjct: 489 ----DTVTEEIVAQVQPQARDLGYAQKHVDVVRNAMVAVTKGGTGTRVFAGAAYTSAGKT 544

Query: 540 GTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEAPKIVVSVMVENGESGSGVAAPVV 599
           GTAQ V++    +     L+ER RDHAL++AFAPAEAP I V+ +VEN   G+  AAP+V
Sbjct: 545 GTAQAVSLGPKARASGKALEERQRDHALYMAFAPAEAPTIAVAAIVENAGFGAAHAAPIV 604

Query: 600 RQIMDAWL 607
           R++ D W+
Sbjct: 605 RRVFDYWI 612