Pairwise Alignments

Query, 629 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

Subject, 582 a.a., peptidoglycan DD transpeptidase from Pseudomonas putida KT2440

 Score =  181 bits (459), Expect = 8e-50
 Identities = 182/630 (28%), Positives = 285/630 (45%), Gaps = 86/630 (13%)

Query: 18  RKRVVVGAVAIMLLVCVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGV 77
           R RVV+G +AIM  V  +  R+  LQ++  D+     +   +   PIP  RGLI DRNG 
Sbjct: 12  RFRVVIGLLAIM--VGAICWRIIDLQVVDRDFLKGQGDARSLRHIPIPAHRGLITDRNGE 69

Query: 78  IVADNRPSFSLSMTRERAGNWQEVLDTIVEVLDLTADDRALFEKRMRQGRRPFEPVPILF 137
            +A + P  +L    +     +E    +   L    + + L E+  +Q  + F  + ++ 
Sbjct: 70  PLAVSTPVTTLWANPKEMQASKERWPQLAAALG--QNPQQLIERLTQQANKEF--IYLVR 125

Query: 138 ELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDPVNYS 197
            L  EQ   V     ++PGV  + +  R YP G   AH VG+    +             
Sbjct: 126 GLTPEQGQHVL--DLKVPGVYGLEEFRRFYPAGDVTAHMVGFTDLDDH------------ 171

Query: 198 GTHHIGKTGIERFYEAALHGQVGYEEVETNARGRVLRVLKRT-DPKPGKDIVLSLDIKLQ 256
                G+ G+E  YE  L G  G  +V  + RGR+++ ++ T + K GK + LS+D++LQ
Sbjct: 172 -----GREGVELAYEEWLAGVPGKRQVIKDRRGRLIKDIQVTKNAKAGKTLALSIDLRLQ 226

Query: 257 EAAEAAL-------GGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISFKAYAELRDS 309
             A   L         + G++V +D +TGEVLAMV+QP+++PN              R  
Sbjct: 227 YLATRELRNAIAEQDAKAGSLVIMDVKTGEVLAMVNQPTYNPN------------NRRSM 274

Query: 310 IDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNASSRV-FDPGYYQLPNYDHKYRNWN 368
               + NR +  ++ PGST+KP    A L SG    + +V   PG  Q+  Y  K  + +
Sbjct: 275 FPAAMRNRAIIDVFEPGSTVKPISMSAALQSGRWKPTDKVEVYPGSLQIGRYTIK--DVS 332

Query: 369 RSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDRLSSYMNKFGIGQRVSLDMFEESAGLMPS 428
           RS    +DL   ++ S++     +A  +G + +   M++ G+GQ   L    E  G +P+
Sbjct: 333 RSEGPILDLTGILINSSNVGMSKIAFDIGGEAIYRVMSQVGLGQYTGLGFPGERVGNLPN 392

Query: 429 -REWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGL 487
            REW++A         ET  L  G G +  T LQL  A A +AN G      + K     
Sbjct: 393 HREWRKA---------ETATLSYGYG-VSVTALQLVHAYAALANDGKMVPLSIIK----- 437

Query: 488 PPVDDNPMEDIVLRDKSDWAKVTHGM-EQVMHNARGTARKAAAGAQYRIAGKSGTAQVVA 546
             VD  P  + V     + A+   GM +QV+   RG  R  A    Y +AGKSGTA+   
Sbjct: 438 --VDKTP--EAVQAIPKEVAETVQGMLQQVIEAPRGVFR--AQVPFYHVAGKSGTARKAT 491

Query: 547 IKQGEKYDRNKLQERHRDHALFVAFAPAEAPKIVVSVMVE----NGESGSGVAAPVVRQI 602
           +   + Y  N  +      +LF  F P   P+  + V+++     G  G  V+APV   +
Sbjct: 492 V-GAKGYTENAYR------SLFAGFGPMSDPRYAIVVVIDEPRKGGYFGGLVSAPVFSNV 544

Query: 603 MDAWL----LDENGRLKPEFAPATVTQESA 628
           M   L    +  +    P  APA  +Q +A
Sbjct: 545 MSGTLRLMNVPPDNLPPPAPAPAVPSQVNA 574