Pairwise Alignments

Query, 629 a.a., transpeptidase (penicillin-binding protein 2) from Pseudomonas putida KT2440

Subject, 634 a.a., peptidoglycan DD-transpeptidase MrdA from Erwinia tracheiphila SCR3

 Score =  519 bits (1336), Expect = e-151
 Identities = 259/620 (41%), Positives = 386/620 (62%), Gaps = 9/620 (1%)

Query: 8   KDHEKDARLVRKRVVVGAVAIMLLVCVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPT 67
           +D+  +  L  +R +V  + I LL  +L+  LY+LQI++YD ++T S  NR+ + P+ P 
Sbjct: 9   RDYTAEQTLFVRRALVAFLGIFLLSAILVVNLYHLQIVRYDDYTTRSNVNRIKLVPVAPN 68

Query: 68  RGLIFDRNGVIVADNRPSFSLSMTRERAGNWQEVLDTIVEVLDLTADDRALFEKRMRQGR 127
           RG+I+DRNG+ +A NR  + + +  E+  N +  L  +  +++L+ +D   FEK  ++ R
Sbjct: 69  RGIIYDRNGIALAMNRTIYKVELVPEKVENLERTLLALQPIVNLSDEDLIAFEKERKRSR 128

Query: 128 RPFEPVPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKE 187
           R F  + +   L EE++AR AVNQ+  PGVEV     R+YP  +   H +GYV +IN+++
Sbjct: 129 R-FTSITVKTGLKEEEVARFAVNQYAFPGVEVKGYQRRYYPYNSALTHILGYVSKINDRD 187

Query: 188 LKTLDPV----NYSGTHHIGKTGIERFYEAALHGQVGYEEVETNARGRVLRVLKRTDPKP 243
           +  L+      +Y+ TH IGK GIER+YE  LHG+ GYEEVE N RGRV+R L    P+ 
Sbjct: 188 IARLNKEGKLPDYAATHDIGKLGIERYYEDILHGKPGYEEVEVNNRGRVIRQLHERPPQA 247

Query: 244 GKDIVLSLDIKLQEAAEAALGGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISFKAY 303
           G+DI L++D++LQ+  E  L G R AVV  DPR G++LAMVS PS+DPNLF+ GIS K Y
Sbjct: 248 GQDIWLTIDLELQQYIETLLAGSRAAVVVTDPRNGDILAMVSMPSYDPNLFIDGISSKGY 307

Query: 304 AELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVNASSRVFDPGYYQLPNYDHK 363
             L +  +RPL NR  +G YPP ST+KP +A++ L +GV+N ++ +FDPG++QLP  +  
Sbjct: 308 NALLNDPNRPLINRATQGAYPPASTVKPYIAVSALSAGVINKNTSLFDPGWWQLPGTEKH 367

Query: 364 YRNWNRSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDRLSSYMNKFGIGQRVSLDMFEESA 423
           YR+W   G G +D+  ++  S DT+FY +A+ MGIDRL+ +M+KFG GQ   +D+ EE+ 
Sbjct: 368 YRDWKHWGHGRLDVTKSLEESADTFFYQVAYDMGIDRLAEWMSKFGYGQLSGVDLLEETP 427

Query: 424 GLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHL--- 480
           G MP+R+WK    ++ W+ G+T+ +GIGQGY  ATPLQ+ +A  ++ N G+   PHL   
Sbjct: 428 GNMPTRKWKMKRFKKPWYQGDTIPVGIGQGYWTATPLQMNKAMMILINNGIIKTPHLMAS 487

Query: 481 AKTIEGLPPVDDNPMEDIVLRDKSDWAKVTHGMEQVMHNARGTARKAAAGAQYRIAGKSG 540
            +      P        +   D   W    +GM  V H   GTARK+ + A Y+I  KSG
Sbjct: 488 TRVNNVKVPWQQPESAQVADIDSGYWEIAKNGMYGVAHRPNGTARKSFSDASYKIGAKSG 547

Query: 541 TAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEAPKIVVSVMVENGESGSGVAAPVVR 600
           TAQV  +K  E Y+ +K+ E  RDH L  A+AP + P + VS+++ENG +G  V   + R
Sbjct: 548 TAQVFGLKANETYNAHKVAEHLRDHKLMTAYAPFDNPHVAVSIILENGGAGPAVGT-ITR 606

Query: 601 QIMDAWLLDENGRLKPEFAP 620
           QI+D  +L +N    P+  P
Sbjct: 607 QILDHIILGDNNTNLPDTTP 626