Pairwise Alignments

Query, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

Subject, 809 a.a., ATP-dependent helicase HrpB from Escherichia coli ECRC62

 Score =  652 bits (1682), Expect = 0.0
 Identities = 387/838 (46%), Positives = 526/838 (62%), Gaps = 36/838 (4%)

Query: 3   SLPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRLAA 62
           SLP+ A L  L  AL+   +V+L AP GAGK+T +PL LL  P + G+ I++LEPRRLAA
Sbjct: 3   SLPVAAVLSELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGIKGK-IILLEPRRLAA 61

Query: 63  RAAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLLI 122
           R  A+RLA  L E+ G+TVGYR+R  + VGP TR+EVVTEG+LTR +Q DP L GVGL+I
Sbjct: 62  RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121

Query: 123 FDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSEGR 182
            DEFHERSL ADLALAL L+ ++ LRDD  LK+L+MSATL+ +RL ++L +APVV SEGR
Sbjct: 122 LDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISEGR 179

Query: 183 MHPVDIRWGRPFQPGEFIEPRVVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQEVLGA 242
             PV+ R+  P    +  +  V       L  ++GS+L+FLPG  EI+RV + L   +G+
Sbjct: 180 SFPVERRY-LPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRIGS 238

Query: 243 RPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLARVP 302
             ++LLCPL+G L LN QR AI P  +G+RKVVLATNIAETSLTI+G+R+V+D    RV 
Sbjct: 239 --DVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVA 296

Query: 303 RFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQAD 362
           RFDP +G+TRL TQR+S+AS TQRAGRAGRLEPG+C  L ++ Q ++ AA    EILQ+D
Sbjct: 297 RFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERAAAQSEPEILQSD 356

Query: 363 LAGLALQLARWGVT-PEQLRWLDQPPAAAYAQAQDLLARLSAFRPGSRDTLSEHGQAMAE 421
           L+GL ++L +WG + P Q+ WLDQPP      A+ LL  L A   G R  LS  GQ MA 
Sbjct: 357 LSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALE-GER--LSAQGQKMAA 413

Query: 422 LPAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQRGGGADLHSRLALVSGESKAARGG 481
           L   PR+A +L+  ++   A  A  +AA+L E    R G +DL             +R  
Sbjct: 414 LGNDPRLAAMLVSAKNDDEAATAAKIAAILEEP--PRMGNSDLGVAF---------SRNQ 462

Query: 482 QGGVQRARQLARQYRGLLRGKVGAPVADPDHPRWLGALLALAYPDRVAQQRRAGGAEYRL 541
               QR++QL      L R  V    AD      +  LLA A+ DR+A++R   G  Y+L
Sbjct: 463 PAWQQRSQQL------LKRLNVRGGEADSS---LIAPLLAGAFADRIARRRGQDG-RYQL 512

Query: 542 ANGRAALFGEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALLEGVLAEQVERVDI 601
           ANG  A+    DAL +  WL+   L       + RI LA   D   L     + V++ D 
Sbjct: 513 ANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDT 572

Query: 602 LDWDEREQVLRAERQVKVGELVLSREPLPGLDDEARTRALLGLVRRKGLNLLTWTPELRQ 661
           ++WD+ +  L+A R++++G+L +  +PL    ++   +A+L  +R KGL++L WT E  Q
Sbjct: 573 VEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ 632

Query: 662 WQARVALLRQLDLQKDGHSEWPDLGDEALLASLEDWLQPYLSKVSRLSHFAALDLPSMLR 721
            + R+    +   + D    WP + DE+LLA+LE WL P+++ V  L    +LD+   LR
Sbjct: 633 LRLRLLCAAKWLPEYD----WPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALR 688

Query: 722 NLLPWPLPQRLEEQAPAHLAVPSGSNIRLDYSE-TPPILAVRLQELFGLADTPRIANGRQ 780
            LL W + QRL+ + PAH  VP+GS I + Y E  PP LAVR+QE+FG A  P IA GR 
Sbjct: 689 GLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRV 748

Query: 781 QVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAK 838
            + L LLSPA+RP+Q+T+DL +FW+  Y EV+K++KGRYPKH WPDDP     T R K
Sbjct: 749 PLVLELLSPAQRPLQITRDLGAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806