Pairwise Alignments

Query, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

Subject, 1295 a.a., ATP-dependent RNA helicase HrpA from Dickeya dianthicola ME23

 Score =  243 bits (620), Expect = 5e-68
 Identities = 161/461 (34%), Positives = 251/461 (54%), Gaps = 16/461 (3%)

Query: 3   SLPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRLAA 62
           +LP+     A+  A+ +   V++    G+GKTT++P   L         I   +PRRLAA
Sbjct: 72  ALPVSQKREAILSAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGLIGHTQPRRLAA 131

Query: 63  RAAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLLI 122
           R+ A+R+A+EL   +G  VGY++R + ++G  T ++++T+GIL   +Q D  L     LI
Sbjct: 132 RSVADRIAAELETPLGGAVGYKVRFNDQIGDNTLVKLMTDGILLAEIQQDRLLMQYDTLI 191

Query: 123 FDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSEGR 182
            DE HERSL+ D  L      R+LL   P LK+++ SAT++ +R SR   +AP++   GR
Sbjct: 192 IDEAHERSLNIDFILGYL---RQLLPRRPDLKVIITSATIDPQRFSRHFGNAPIIEVSGR 248

Query: 183 MHPVDIRWGRPF----QPGEFIEPR-VVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQ 237
            +PVD+R+ RP     Q G+  + + ++D V     +  G +LVF+ G+ EIR    +L 
Sbjct: 249 TYPVDVRY-RPVVEEAQDGDRDQLQAMLDAVDELCREGPGDILVFMSGEREIRDTADALN 307

Query: 238 EVLGARPEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAG 297
           +      EIL  PL+  L  N ++  +     G R++VLATN+AETSLT+ G+R VID G
Sbjct: 308 KQDLPHTEIL--PLYARLS-NQEQNRVFQSHHG-RRIVLATNVAETSLTVPGIRYVIDPG 363

Query: 298 LARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAE 357
            AR+ R+   + + RL  + +S+ASA QR GR GR+  G+C RL+SE       A    E
Sbjct: 364 TARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVAAGICIRLYSEQDFLSRPAFTDPE 423

Query: 358 ILQADLAGLALQLARWGVTP-EQLRWLDQPPAAAYAQAQDLLARLSAFRPG--SRDTLSE 414
           IL+ +LA + LQ+   G+       ++D P          LL  LSA +        L+ 
Sbjct: 424 ILRTNLASVILQMTALGLGDIAAFPFVDAPDKRNIQDGVRLLEELSALQSSDDGHYRLTP 483

Query: 415 HGQAMAELPAHPRIAHLLLRGQDLGLAQMACDVAALLGERD 455
            G+ +A+LP  PR+A ++L  +     + A  + A L  +D
Sbjct: 484 QGRHLAQLPIDPRLARMVLEARQTSCVREAMIITAALSIQD 524