Pairwise Alignments

Query, 842 a.a., ATP-dependent helicase HrpB from Pseudomonas putida KT2440

Subject, 828 a.a., helicase from Agrobacterium fabrum C58

 Score =  622 bits (1605), Expect = 0.0
 Identities = 372/840 (44%), Positives = 495/840 (58%), Gaps = 27/840 (3%)

Query: 4   LPIDAALPALRQALENRDEVVLEAPPGAGKTTRVPLALLHEPWLAGQSILMLEPRRLAAR 63
           LP+ A L  + Q L  +   VL APPGAGKTT VPL LLHE W     I++LEPRRLAAR
Sbjct: 15  LPVSAVLGDIAQVLAAKKRAVLSAPPGAGKTTLVPLRLLHEDWRGDGKIILLEPRRLAAR 74

Query: 64  AAAERLASELGEQVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLLIF 123
           AAA R+A  L E VGETVGYR+RLD++V  KTRIEVVTEG+  R +  DP L GV  +IF
Sbjct: 75  AAAGRMAELLRENVGETVGYRMRLDNRVSSKTRIEVVTEGVFARMVLDDPELSGVSTVIF 134

Query: 124 DEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLDDAPVVSSEGRM 183
           DEFHERSLD D  LAL+L+ +  LR+D  L+IL+MSATL+ ER+  L+ DAPV+ S GR 
Sbjct: 135 DEFHERSLDGDFGLALALDVQAGLRED--LRILVMSATLDVERIGALMGDAPVIQSLGRT 192

Query: 184 HPVDIRWGRPFQPGEFIEPRVVDCVLHALADQAGSVLVFLPGQAEIRRVHQSLQEVLGAR 243
            P+DIR+   +Q G  ++ +V   +  A A + GS+L FLPGQAEI R    L+      
Sbjct: 193 FPIDIRYEERWQ-GIHVDEKVAKAITEAHASETGSILAFLPGQAEITRTASRLEGRFPDD 251

Query: 244 PEILLCPLHGELDLNAQRAAIDPPAKGLRKVVLATNIAETSLTIDGVRVVIDAGLARVPR 303
            +I+  PL+G L    Q AAI P   G RK+VLAT+IAETS+TIDGVRVVID+GL R+P 
Sbjct: 252 TDII--PLYGNLSQKEQDAAIKPAPGGRRKIVLATSIAETSITIDGVRVVIDSGLQRLPV 309

Query: 304 FDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQADL 363
           F+P +G+TRL+T R+SRASA QRAGRAGR EPG+  RLW + Q   L A    +IL +DL
Sbjct: 310 FEPATGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAALNAFTPPQILASDL 369

Query: 364 AGLALQLARWGV-TPEQLRWLDQPPAAAYAQAQDLLARLSAFRPGSRDTLSEHGQAMAEL 422
           +GLAL LA WGV  P  L +LD PP AA  ++  LL  L A    +   L+  G  M  L
Sbjct: 370 SGLALDLAHWGVHDPSALAFLDAPPEAALKESVALLKNLGAL--DNSGGLTRQGHLMRGL 427

Query: 423 PAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQRGGGADLHSRLALVSGESKAARGGQ 482
              PR+A +++   + G  + A  +A +L E+ +  G   DL  RL     E        
Sbjct: 428 SLPPRLAAMVIASAEEGAGKKAAMLAVMLTEQGL-GGNDIDLDERLRRFFSERS------ 480

Query: 483 GGVQRARQLARQYRGLLRGKVGAPVADPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLA 542
              +RA Q AR+    L   +G   A  + P  +GALL  AYPDR+A QR A G  Y +A
Sbjct: 481 ---ERA-QAARKLASRLLDAIGDKTAKAETPSEVGALLLHAYPDRIALQRGARG-RYVMA 535

Query: 543 NGRAALFGEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALLEGVLAEQVERVDIL 602
           NGR A   E + L     LV+AD+  R  Q   R+  AA  + A +E  +   + + + L
Sbjct: 536 NGRGAELAETERLAASKMLVVADITGRAAQ--PRVLAAAAIERADIEERMPHLIVQQEQL 593

Query: 603 DWDEREQVLRAERQVKVGELVLSREPLPGLDDEARTRALLGLVRRKGLNLLTWTPELRQW 662
            +D+     RA +  ++G ++L   PLP  D E   RAL   VR  GL++L ++ E  Q 
Sbjct: 594 LFDKASGQARARKVTRLGAIILDETPLPRPDGEQAARALANGVREFGLDILPFSKETLQL 653

Query: 663 QARVALLRQLDLQKDGHSEWPDLGDEALLASLEDWLQPYLSKVSRLSHFAALDLPSMLRN 722
           + R+       L       WPD+ D ALLA LE+W  P+ +    L       L   + +
Sbjct: 654 RDRIGF-----LNASIGDPWPDVSDAALLARLEEWFVPFQNGARSLQDIRPGSLSEGILS 708

Query: 723 LLPWPLPQRLEEQAPAHLAVPSGSNIRLDYSETPPILAVRLQELFGLADTPRIANGRQQV 782
           L+P  + + L   AP H   P+G    + Y  + P L++R+QELFGL   P IA GR  +
Sbjct: 709 LVPHEVARDLGRLAPTHFEAPTGQRHPIRYDASEPTLSIRVQELFGLKAHPAIAQGRLPL 768

Query: 783 KLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPRGS 842
            L L SPA RP+Q T+DL  FW  ++ +V+ D++GRYP+H WP+DP  A  T+RAKPRG+
Sbjct: 769 LLELTSPAHRPIQTTRDLPGFWTGSWKDVRADMRGRYPRHPWPEDPASALPTSRAKPRGT 828