Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  287 bits (735), Expect = 4e-82
 Identities = 164/409 (40%), Positives = 243/409 (59%), Gaps = 5/409 (1%)

Query: 3   FAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQR 62
           F++  L E LL+ + +L +  PTPVQA AIP  L GRDL   AQTG+GKTA F LPVL R
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNR 61

Query: 63  LALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRLR 122
           L   G      SI+ L+L+PTRELA+Q    V  +++   + +  + GG     Q   LR
Sbjct: 62  LI--GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQAAMLR 119

Query: 123 RGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQT 182
           +  D+L+ TPGR+++      +   +V+ LVLDEADRMLD+GFA+++Q + +    ++QT
Sbjct: 120 KVPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVSECVNRQQT 179

Query: 183 LLFSATFSDQ-IRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKK-RKADLFCHLLR 240
           +LFSAT     +R +    LN+P  ++V+  +   A+ +Q +V  D    K  +   LL 
Sbjct: 180 MLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLA 239

Query: 241 KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA 300
            + +++ +VF  TR   D++  RL+A+   A  +HG++ Q  R+ A+D  KA  V++LVA
Sbjct: 240 NETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVA 299

Query: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE 360
           TDVAARGLD+D L LV+N D+P   ++YVHRIGRTGRAGN G AISL+C  +  L+++IE
Sbjct: 300 TDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIE 359

Query: 361 VLTRQTLPRHEEPDFIPEHRVP-MTDASGQVIKKPKKPKKPKENSAKRG 408
              +Q+  R    +    +  P    ASG+ +   KK    K +  K G
Sbjct: 360 RYLKQSFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKTDAKGDKKKTG 408