Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  387 bits (993), Expect = e-112
 Identities = 194/381 (50%), Positives = 267/381 (70%), Gaps = 3/381 (0%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           MNF +L L   +L+ + +  Y TPTP+QA+AIPAVL G DL+  AQTGTGKTA F LP+L
Sbjct: 1   MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPML 60

Query: 61  QRLALEGE---KVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQ 117
            +L++      K     IRALVL PTRELA QV  +VR Y + L L +  ++GGV +NPQ
Sbjct: 61  HKLSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ 120

Query: 118 MMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALP 177
           + +L++GVD+LVATPGRLLDL +Q  +  +QVQ L+LDEADRMLD+GF  +++ + A +P
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP 180

Query: 178 RKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCH 237
           +++Q+LLFSATFSD IR LA   L +P SI+V+PRN T   + Q + PV + +K  L  H
Sbjct: 181 KEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH 240

Query: 238 LLRKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQV 297
           ++ + +W QVLVF +T+ G + + E L   G+ A  +HG++ Q+ R +AL  FK+ +++ 
Sbjct: 241 IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA 300

Query: 298 LVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLA 357
           LVATD+AARG+DID+LP VVN ++P V+EDYVHRIGRTGRAG+ GEA+S VC DE   + 
Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ 360

Query: 358 AIEVLTRQTLPRHEEPDFIPE 378
            IE  T+QT+P      F PE
Sbjct: 361 EIERFTKQTIPVQIVEGFGPE 381