Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 427 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  347 bits (889), Expect = e-100
 Identities = 199/404 (49%), Positives = 248/404 (61%), Gaps = 5/404 (1%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           M F  LGL   L+    +  Y  PT +QA AIPA+L GRD+  +AQTG+GKTA F+LP+L
Sbjct: 1   MPFDSLGLAPALVHAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLL 60

Query: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLP--LTTYAVYGGVSINPQM 118
           QRL  E    ++  +RALVLVPTRELA QV   +R  A++LP  L     +GGVSINPQM
Sbjct: 61  QRLGAERPPGSTRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIVVAFGGVSINPQM 120

Query: 119 MRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPR 178
           M LR G D++VATPGRLLDL   NA++ + V TLVLDEADR+ DLGFAEEL  + A LPR
Sbjct: 121 MSLRGGADIVVATPGRLLDLADHNALRLDAVATLVLDEADRLFDLGFAEELGRILALLPR 180

Query: 179 KRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHL 238
           +RQ LLFSATF   I+ LA   L DP  I+V     T  ++ Q ++ VD  R+  L  HL
Sbjct: 181 QRQNLLFSATFPPAIQALADATLRDPAVIDVQGEPGTEPNIVQRVIEVDAARRTQLLRHL 240

Query: 239 LRKQ--RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQ 296
           L++    W +VLVF  T++    + E+L   G+ A   HGD  Q TR   L  FK     
Sbjct: 241 LKQHEGEWDRVLVFVATQHAAQTVAEKLYKNGIYAVPFHGDIAQGTRTDILAQFKQSRWD 300

Query: 297 VLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLL 356
           V++ATD+AARG+DI  LP+V+N DLP    DY+HRIGRTGRAG  G AIS V A      
Sbjct: 301 VVIATDLAARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSAASEAHF 360

Query: 357 AAIEVLTRQTLPRHEEPDFIP-EHRVPMTDASGQVIKKPKKPKK 399
             IE     +LPR     F P E   P+ DASG    K K+P K
Sbjct: 361 RLIEKRQGLSLPRERVEGFEPTEVAPPVVDASGTGGIKGKRPSK 404