Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 479 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Sphingobium sp. HT1-2

 Score =  318 bits (815), Expect = 2e-91
 Identities = 180/419 (42%), Positives = 246/419 (58%), Gaps = 11/419 (2%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           M+F +LGL EP+++ L    Y  PTP+Q KAIP +L GRDL   AQTGTGKTA FALP L
Sbjct: 1   MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL 60

Query: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120
              A   +       R LVL PTRELA Q+  + R+Y   L L+   V+GGV +N Q+  
Sbjct: 61  DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA 120

Query: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180
           L  GVD++VATPGRLLDL  Q A      +  VLDEAD+M+D+GF   L+ +   LPR R
Sbjct: 121 LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR 180

Query: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR 240
           Q L FSAT   +I  LAG  LNDP+ + V+P++ TA  V+Q L  V++  K  L   +L+
Sbjct: 181 QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK 240

Query: 241 KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA 300
            +   + L+F +T++G D++V  L   G+ A  IHG++ QA R  AL +F+    ++LVA
Sbjct: 241 TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA 300

Query: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE 360
           TD+AARG+D+  +  V+N ++P V E YVHRIGRT RAG  G AIS V  DE   L AIE
Sbjct: 301 TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE 360

Query: 361 VLTR---QTLPRHEE--------PDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRG 408
             T+   + +P  E         P   P+ R P    + Q  +   + +  +   A+RG
Sbjct: 361 RATKVKPEIVPLPENFLEAVRNLPKPAPQRRGPSQSPAQQAKRAEGQRRYQEGQKAQRG 419