Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  330 bits (846), Expect = 5e-95
 Identities = 175/403 (43%), Positives = 257/403 (63%), Gaps = 8/403 (1%)

Query: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60
           M F  L +I P+L+ L+   Y  PT +QA+AIP +L GRD++  AQTGTGKTA FA+P++
Sbjct: 1   MKFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPII 60

Query: 61  QRLALEGEKVASNS----IRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINP 116
           Q +    E   +N     IR+L++ PTRELA Q+  N+ EYA+N  ++   ++GGV    
Sbjct: 61  QHIH---EAPYANEPWAKIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQGA 117

Query: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAAL 176
           Q+ +L++GV +LVATPGRLLDL  Q  +    +   VLDEADRMLD+GF  +++ +   L
Sbjct: 118 QVAQLKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKIL 177

Query: 177 PRKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFC 236
           P+KRQ+L FSAT  D I  L+   L++P  +EV+P ++TA +++Q++   +K  K  L  
Sbjct: 178 PKKRQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLI 237

Query: 237 HLLRKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQ 296
           H+L K+   QVL+F++T++G D++V  L  + + A  IHGD+ Q  RQR L  FK  +++
Sbjct: 238 HILEKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLR 297

Query: 297 VLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLL 356
           VLVATD+AARG+DID L  V+N D+P   E Y+HRIGR+GRAG +G AISL   +E   +
Sbjct: 298 VLVATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADV 357

Query: 357 AAIEVLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKK 399
            AIE L  + +    +  F P+   PMT    +   K K+ +K
Sbjct: 358 KAIEKLANKNITVISDHPF-PQTDKPMTAQEKKEFNKEKQRRK 399