Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  330 bits (846), Expect = 6e-95
 Identities = 185/413 (44%), Positives = 254/413 (61%), Gaps = 4/413 (0%)

Query: 2   NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
           +F +LGL E ++ ++ QL YTTPTP+QAKAIP +L GRDL+  AQTGTGKTA F LP+++
Sbjct: 15  SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74

Query: 62  RLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRL 121
            L  + ++ A+ + R L+L PTREL  Q+ +N+R + +  PL    V GG SIN Q ++L
Sbjct: 75  MLMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQL 134

Query: 122 RRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQ 181
            +G D+LVATPGRLLDL  +NA+  ++V  LVLDEAD+MLDLGF  +L+ +   +P KRQ
Sbjct: 135 EKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQ 194

Query: 182 TLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWL-VPVDKKRKADLFCHLLR 240
           TLLFSAT    I  LA   L DP+ +EV+P    A  V+Q++     K  K DL    L 
Sbjct: 195 TLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLN 254

Query: 241 KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA 300
           +    + +VF +T++G ++L + L   G     IHG++ Q  R+RAL  FK  E++VLVA
Sbjct: 255 ENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVA 314

Query: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE 360
           TDVAARG+DI  +  V N DLP V + YVHRIGRT RAG  G AI+    DE +LL  IE
Sbjct: 315 TDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIE 374

Query: 361 VLTRQTLP--RHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGR 411
            L +  +P    E P  +     P  +  G+      +P+ P+E     G  R
Sbjct: 375 KLMKIDIPVASGERPAGLASPTRPNNNRGGR-NNNGGQPRGPREGGRHNGESR 426