Pairwise Alignments

Query, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 503 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  279 bits (714), Expect = 1e-79
 Identities = 178/444 (40%), Positives = 244/444 (54%), Gaps = 19/444 (4%)

Query: 3   FAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQR 62
           F+ LGL + +L  +    YTTPTP+QA AIP  L  RD+   AQTGTGKTA F LP+L  
Sbjct: 4   FSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLT- 62

Query: 63  LALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRLR 122
             LE  +  +   R L+L PTRELA QV  N  +Y +N  L    + GGVS   Q  +L 
Sbjct: 63  -LLEKGRARARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLE 121

Query: 123 RGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQT 182
           RG D+L+ TPGRLLD   +  +    V+ LV+DEADRMLD+GF  +++ +   +P  RQT
Sbjct: 122 RGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQT 181

Query: 183 LLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKK--RKADLFCHLLR 240
           L FSAT   +I+ LA   L +P  IEV+  ++TA +V Q +V    K   K  +   L+R
Sbjct: 182 LFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVR 241

Query: 241 KQ--RWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVL 298
            +    K  ++F   +  V  L   L   G +   +HGD  Q +R   L +F+  ++ +L
Sbjct: 242 AEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLL 301

Query: 299 VATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAA 358
           VA+DVAARGLDI D+  V N D+PI AEDYVHRIGRTGRAG  G+A +LV   + + L A
Sbjct: 302 VASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDA 361

Query: 359 IEVLTRQ----------TLPRHEEPDFIPEHRVPMTDASGQVIKKPKK--PKKPKENSAK 406
           IE L  +          +LP   E       R    + SG+   + ++  P  P EN   
Sbjct: 362 IEKLIAEKIEWLSGDLSSLPAPMESFESNSGRRGTKERSGRGRDRNRRDAPASPVEN-IN 420

Query: 407 RGLGRWMDSTEAASAEPAVKAVRK 430
           +     +D+  AA  E  VKA R+
Sbjct: 421 QDAQSVVDTDIAAHGEDKVKAERR 444