Pairwise Alignments

Query, 304 a.a., Histone deacetylase family protein from Pseudomonas putida KT2440

Subject, 308 a.a., Deacetylases, including yeast histone deacetylase and acetoin utilization protein from Variovorax sp. SCN45

 Score =  201 bits (512), Expect = 1e-56
 Identities = 114/283 (40%), Positives = 160/283 (56%), Gaps = 18/283 (6%)

Query: 11  YSPEF----PAEHRFPMDKFRLLHDHLVGSGLTTDQALLRPDICP---NDILALAHDRSY 63
           YS +F    P  HRFPM ++ +L D L+          +R D+ P   +D LALAH   +
Sbjct: 5   YSGQFVLPLPEGHRFPMSRYAMLRDRLL-----EQLPAVRMDVAPRAGDDELALAHTPEW 59

Query: 64  IERYMNGELSREDQRRLGLPWSEALARRTVRAVGGSLLTAEMALQHGIACHLAGGTHHAH 123
           I     G +S +  R +G PWSEA+  R+ R+ G ++    +A   G++ ++AGGTHHA+
Sbjct: 60  IAAVSEGSVSPQAMREIGFPWSEAMVERSRRSAGATIAACRVAFAEGVSANMAGGTHHAY 119

Query: 124 YDHPAGFCIFNDLAVISRYLLEA-----GRVHRVLIFDCDVHQGDGTARILHDTPEAITV 178
               +GFC+FND AV +R L++A     GR   V + D DVHQG+GTA I  D P   T+
Sbjct: 120 AGKGSGFCVFNDAAVAAR-LMQAEHARDGRRLPVAVIDLDVHQGNGTASIFQDDPSVFTL 178

Query: 179 SLHCEQNFPARKAQSDWDIPLPRGMGDTAYLKVVDDALNYLLPLYQPDLVLYDAGVDVHK 238
           SLH ++NFP RK  SD D+ LP G GD  YL  ++ AL  L   + P LV+Y AG D  +
Sbjct: 179 SLHGQKNFPFRKEASDLDVELPDGCGDADYLAALEHALEELDRRFAPALVIYLAGADPFE 238

Query: 239 DDALGYLQLTDAGVAARDEAVLRHCLGRDIPVMGVIGGGYSKD 281
            D LG L+L+  G+ ARD  V      R +P+   + GGY+ D
Sbjct: 239 RDRLGRLKLSFDGLEARDRRVFDWAWQRRLPMAFAMAGGYASD 281