Pairwise Alignments

Query, 219 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 249 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  111 bits (277), Expect = 1e-29
 Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 4/193 (2%)

Query: 4   LLTMWMQWLPELWKGFVLSMQVTAVSLGLGVVLGLLLALGVSSPSRWLRYPSLVVVELGR 63
           L + W  ++   W    L++++TA+++ +GV +G L+A    S  R L     + +E+ R
Sbjct: 10  LASYWPVFINGAW----LTLKMTALAVVIGVAVGTLVAFAKRSKIRLLSRACTIYIEIVR 65

Query: 64  GAPALILLQYFYFGLPSVNLTLTSFWAAALAMAYCTAAYTSEIIRGGIESVAAGQTEAAE 123
             P L+ +   YFGL S  + + +F AA LAM    AAY +EIIR G+ESV  GQ EAAE
Sbjct: 66  NTPFLVQIFLLYFGLASFGVRMPTFAAAVLAMVINIAAYAAEIIRAGLESVPRGQIEAAE 125

Query: 124 VIGLNRFDALRFVILPQALRVALPSLLGFSIMMFQASSLCFTIALPEIVSRASSIGSSTF 183
            +GL+++     V+L  ++    P+L    ++M QAS++   I+  E+ + A+++ S TF
Sbjct: 126 CLGLSKWRIGWHVMLQPSIEKVYPALTSQFLLMMQASAMASQISAEELTAIANTVQSDTF 185

Query: 184 EYMPVLILAGLMY 196
             +   I+   +Y
Sbjct: 186 RSLETYIVVAALY 198