Pairwise Alignments

Query, 219 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  122 bits (306), Expect = 5e-33
 Identities = 73/215 (33%), Positives = 116/215 (53%), Gaps = 5/215 (2%)

Query: 2   SELLTMWMQWLPELWKGFVLSMQVTAVSLGLGVVLGLLLALGVSSPSRWLRYPSLVVVEL 61
           S LL  W   L  L    +LS+     +L LG  LGL    G +    WLR P +  ++ 
Sbjct: 6   SPLLDSWQYLLGGLGVTLLLSVLTAIGALVLGTALGLGRVYGAA----WLRIPIVFYIDT 61

Query: 62  GRGAPALILLQYFYFGLPSVN-LTLTSFWAAALAMAYCTAAYTSEIIRGGIESVAAGQTE 120
            R  P L++L +FYF +P +  ++   FWAA +A+    AAY +EI+R GIES+  GQ  
Sbjct: 62  QRAIPVLVILVWFYFAVPILTGISFHPFWAALMALTLHIAAYVAEIVRAGIESIRPGQIR 121

Query: 121 AAEVIGLNRFDALRFVILPQALRVALPSLLGFSIMMFQASSLCFTIALPEIVSRASSIGS 180
           AA  +G++R   +R V+LPQAL   LP+      +  + +++   IA+PE++ RA +I  
Sbjct: 122 AALALGMSRAQIVRKVVLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELMKRAETIAG 181

Query: 181 STFEYMPVLILAGLMYAAVCAPATLGVAALEKRLA 215
            ++  + V  +  ++Y  +  P T  + AL KR+A
Sbjct: 182 QSYRPIEVFTVVMVIYFIILFPGTRLIDALYKRVA 216