Pairwise Alignments

Query, 219 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 229 a.a., Octopine transport system permease protein OccM from Azospirillum sp. SherDot2

 Score =  120 bits (301), Expect = 2e-32
 Identities = 78/220 (35%), Positives = 113/220 (51%), Gaps = 9/220 (4%)

Query: 6   TMWMQWLPELWKGFVLSMQVTAVSLGLGVVLGLLLALGVSSPSRWLRYPSLVVVELGRGA 65
           T+    LP L     L++Q+ A++L  G VL    AL   S +R     +     + RG 
Sbjct: 4   TLMWDSLPRLLAALPLTLQLVALALAFGAVLAFATALLRLSGNRVAVALTSAYTFIFRGT 63

Query: 66  PALILLQYFYFGLPSVNLTLTSF---------WAAALAMAYCTAAYTSEIIRGGIESVAA 116
           P L+ +   Y+GL  ++L   SF         W A LA+A  T AYTSEI+RG IE+V  
Sbjct: 64  PLLVQIFLIYYGLSQIDLIRDSFLWPVLSQPMWCAILALALNTGAYTSEILRGAIETVPQ 123

Query: 117 GQTEAAEVIGLNRFDALRFVILPQALRVALPSLLGFSIMMFQASSLCFTIALPEIVSRAS 176
           GQ EAA   G++R    R ++LP A+R  LP+     I+M +ASSL  TI + EI   A 
Sbjct: 124 GQVEAARACGMSRVRLFRRIVLPVAIRQMLPAYGNEVILMVKASSLASTITMMEITGVAR 183

Query: 177 SIGSSTFEYMPVLILAGLMYAAVCAPATLGVAALEKRLAP 216
            + + TF    + I+AG++Y  +   AT  +   E R+ P
Sbjct: 184 RMIAQTFAVFEIFIVAGILYLLINFVATRLIKHAEWRMTP 223