Pairwise Alignments

Query, 266 a.a., Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 25/225 (11%)

Query: 38  FPPYSIPGPNNQLSGVDGEIIKRIAERECLKVKTMVVDTAAVVQAVVAKRADVGIGDWYR 97
           +PP++    +N+L G D +I   + E+  ++   +  D   ++ A++A++ D  +     
Sbjct: 32  YPPFNYVDADNKLHGFDVDITHALCEQMKVECTLVAQDWEGIIPALMARKYDAIVASMID 91

Query: 98  TAERSKALGLSAPLYLDVMGIISDEGYTKISELDGKRIGTVQGY-----------LWVDD 146
           T ER K +  +   Y   + +       K S++D  +   V GY           ++ +D
Sbjct: 92  TEERRKKIAFTDHYYRTPLTV----AVAKDSKIDSAQTDFV-GYTVGAQSSSTQAIYAED 146

Query: 147 LKKAFGDNLVLYPNPVAMAQDLTSRRIQ-VGADSFAVAVSSQQKGGYPGKSIKVSEPDQR 205
           +    G ++ LYP       DL + R+  V AD F +     + G   G   K+      
Sbjct: 147 VYGKAGADVKLYPTMDEANADLAAGRLDGVIADKFPLHEWMNKNG---GDCCKILGDVAD 203

Query: 206 VKATLEPGQSAFPYTKANAALGEALGKNIQALHASGEIAEILASF 250
            KA      +A    K + AL + L   +Q + A+G   +I + +
Sbjct: 204 TKA-----DAAIAVRKDDEALRQRLNTALQQIVANGTYQKIASKY 243