Pairwise Alignments

Query, 510 a.a., transposase from Pseudomonas putida KT2440

Subject, 583 a.a., Mobile element protein from Variovorax sp. SCN45

 Score =  225 bits (573), Expect = 4e-63
 Identities = 152/474 (32%), Positives = 234/474 (49%), Gaps = 21/474 (4%)

Query: 46  RLFNRKSEQTVESNTPQLALFNEPESQWVPTADDADEEVVAPSKQRGKRKPLSADLPRIE 105
           RLF     +       QL       +     A  +D    APS+ R +R P    L R+E
Sbjct: 112 RLFEETLAEDEAGLREQLERLRREAAAAAAAAAASDTTTKAPSR-RPRRNPFPDHLRRVE 170

Query: 106 VIHDLPEHELTCACGCRKHV--VGEQTSEQLDIVPMQIRVLKHVRKIYGCRGCETAPVTA 163
             H+ PE       GC + +  +G++ SE+LDIVP +  V +H+   + CR C+     A
Sbjct: 171 HHHE-PERTDCLEPGCGRPMTRIGQEVSERLDIVPAEFFVHRHIYGKWACRCCQVLR-QA 228

Query: 164 DKPAQLIEKSMASPSVLAMLLTTKYVDGLPLHRFETVLNRHGIEIPRQTLARWVIQCSEH 223
              A++IE  +A+   +A  L +++VD +P +R  T+  R G+  PR TLA    Q    
Sbjct: 229 PSVAEVIEGGIAASGFVAHTLISRFVDHMPYYRQTTINARSGVHTPRSTLASITGQAGAA 288

Query: 224 FQPLLNLMRDRLLESPVIHCDETRVQVLKEPDRDPTSQSWMWVQASGPPDRQV-VLFDYT 282
            QPL    R  +L   V+H DET V +L +P    T ++++W  A    D+   V++++ 
Sbjct: 289 LQPLHEAHRRFILSCAVLHADETPVSLL-DPGAGKTRRAYVWAYARSWHDKVPGVIYEFC 347

Query: 283 TSRAQEVPLRLLEG-------YRGYVMTDDYAGYNALA---LQPGVERLACMAHVRRKFV 332
             R  + PL  L G       + G +++D Y+ Y  +    L P     AC AH RR F 
Sbjct: 348 PGRGAQYPLAFLGGRERHGRRWSGTLLSDRYSAYETVVDPRLYPDRLGAACAAHARRNFE 407

Query: 333 EAQKVQPKGKSGRADVALTMINKLYGIERDLKDASDEQRFIGRQERSLPILEQLKSWLDK 392
           E   +   G S     A+    ++YG+E  L+D SD+ R   RQ+ + P+ E+LK WL  
Sbjct: 408 E---LTHDGTSVVGLEAVRRFARIYGVEAQLQDLSDDDRRAQRQQLARPLWEELKHWLQL 464

Query: 393 THSQVTPQSVLGKAVLYLANNWNRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFSDT 452
               V       KA+ Y   +W  L R++  G + IDNN  ER IKP+ +GR+AW+F  +
Sbjct: 465 ERRLVADGGPTAKAIDYTLGHWTALTRHLNDGAVAIDNNHLERQIKPWAMGRRAWMFVGS 524

Query: 453 PKGATASAQIYSLVETAKVNGQEPYTWLRHVLERLPHASSVADYEALLPWNCSP 506
                 +A + SLV++A++NG +P+ +LR VL+RLP     +  E LLP    P
Sbjct: 525 ELAGQRAAIVMSLVQSARLNGHDPWAYLRDVLQRLP-TQRASQIEDLLPHRWQP 577