Pairwise Alignments

Query, 510 a.a., transposase from Pseudomonas putida KT2440

Subject, 515 a.a., IS66 family transposase from Magnetospirillum magneticum AMB-1

 Score =  280 bits (717), Expect = 7e-80
 Identities = 186/525 (35%), Positives = 276/525 (52%), Gaps = 33/525 (6%)

Query: 4   VPDNLPDDPAALKLLLA-QLLAERTVDKG------QIVDLKEQVKLLRDRLFNRKSEQTV 56
           VPD LP D  AL+ ++A Q  A      G      ++  L+ ++  LR   F R SE+  
Sbjct: 2   VPDALPTDIVALQAIIATQADALAAAQAGLMSKTLEVEKLRIELARLRRMQFGRSSEKIS 61

Query: 57  ESNTPQLALFNEPESQWVPT---ADDADEEVVAPSKQRGKRKPLSADLPRIEVIHDLPEH 113
            +      +  E ES        A+D   +  AP + R +R PL   LPR EV+HD    
Sbjct: 62  RAADQLELMLEEVESSAAAALAPAEDGASDGPAPKRNRARR-PLPPHLPRTEVVHD---S 117

Query: 114 ELTC-ACGCRKHVVGEQTSEQLDIVPMQIRVLKHVRKIYGCRGCETAPVTADKPAQLIEK 172
             TC +CG     VGE  +E LD VP + +V++H+R  Y CR CE   V A  P+  IE+
Sbjct: 118 ACTCPSCGGAMRKVGEDVTEILDYVPGRFQVIRHIRPAYSCRACE-GMVQAPMPSMPIER 176

Query: 173 SMASPSVLAMLLTTKYVDGLPLHRFETVLNRHGIEIPRQTLARWVIQCSEHFQPLLNLMR 232
            + S ++LA +L +KY D LPL+R   +  R G+++ R  LA WV + +   +PL++   
Sbjct: 177 GLPSAALLAHVLVSKYCDHLPLYRQSGIYARDGVDLDRGLLAEWVGKAATLVRPLVDAAE 236

Query: 233 DRLLESPVIHCDETRVQVLKEP-DRDPTSQSWMWVQASGP---PDRQVVLFDYTTSRAQE 288
              +    IH D+T V VL     +  T + W +++   P   P    V + Y+  R  E
Sbjct: 237 AHAMAGGQIHGDDTPVPVLAPGIGKTKTGRLWAYLRDERPWDGPAPPAVAYRYSPDRKGE 296

Query: 289 VPLRLLEGYRGYVMTDDYAGYNALALQ-----PGVERLACMAHVRRKFVEAQKVQPKGKS 343
            P + L G+RG++  D YAG+  L L      P V  +AC AHVRRKF +   V     +
Sbjct: 297 RPQKHLAGFRGHLHADGYAGFGELYLAKEGKPPPVTEVACWAHVRRKFHD---VHVATTA 353

Query: 344 GRADVALTMINKLYGIERDLKDASDEQRFIGRQERSLPILEQLKSWLDKTHSQVTPQSVL 403
             A  AL  I +L+ +ER +     +QR   RQ  + PI+  L  +LD + ++++ +S L
Sbjct: 354 PIAAEALERIGRLFAVERAIVGIPPDQRRAIRQVEACPIMGDLAGYLDASLTRISGKSEL 413

Query: 404 GKAVLYLANNWNRLERYVEAGHLPIDNNLAERAIKPFVIGRKAWLFSDTPKGATASAQIY 463
             A+ Y  + W+ L RY++ GHL I NN AERA++P  +GRK WLF+ +  G   +A IY
Sbjct: 414 AAAIRYARSRWSALTRYLDDGHLEISNNAAERAMRPLALGRKNWLFAGSDAGGDRAAAIY 473

Query: 464 SLVETAKVNGQEPYTWLRHVLERLPH--ASSVADYEALLPWNCSP 506
           +L ETAK+NG +P  +LR VL R+     + +AD   LLPWN +P
Sbjct: 474 TLTETAKLNGLDPEAYLRDVLTRIADHPVNRIAD---LLPWNIAP 515