Pairwise Alignments

Query, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

Subject, 958 a.a., type I site-specific deoxyribonuclease, HsdR family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 47.4 bits (111), Expect = 4e-09
 Identities = 69/328 (21%), Positives = 124/328 (37%), Gaps = 45/328 (13%)

Query: 167 RYYQMNAINRTVEAVARGQDRVLLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNI 226
           R YQ  A    ++ V        +   TG+GKT T+F+    L    Q  +++F+ DR  
Sbjct: 241 RPYQFYATEAIIDRVKTTTKYGYIWHTTGSGKTLTSFKTSQILTNLPQVHKVVFVVDRKD 300

Query: 227 LVDQTKNNDFKPF------GQAMTKIARRQIDTSYEIYLSLYQAVTGAEEEMNVYKQFS- 279
           L  QT   +F  F      G   T    +Q+    ++ ++  Q +  A  +   + +   
Sbjct: 301 LDYQT-TKEFNSFSKGSIDGTNDTGTLVKQLAGDNKLIVTTIQKLNTAVTKKRFFHKLET 359

Query: 280 -RDFFDLIVIDECHRGSAAEDSAWREILGYFSNATHVGLTATP--------KETKEVSSI 330
            +D   + + DECHR    +      I  +F N    G T TP         E  + ++ 
Sbjct: 360 LQDKRIVFIFDECHRSQFGK--THESIKSFFVNGQMFGFTGTPIFEENAGTNEYGKRTTT 417

Query: 331 TYFGEPVYSYTLKQGIEDGFLAPYKVVRIDFDKDLQGWRPPKGMLDKNGELIEDRIYNLK 390
             F + ++ Y +   I D  +  + +  I                 K  + ++D   N++
Sbjct: 418 MLFQDCLHKYVITDAIRDENVLKFSIEYI--------------QTFKRKDQVQD--INVE 461

Query: 391 DMDRTLVIETRTQL---VAQKVTEFLKASDPFQKTIVFCDDINHAERMRQALVNLNPERV 447
            +D   V+E   +L   V   +T   + +   + T +FC  +   E + +  V    + V
Sbjct: 462 AIDEAEVMEASPRLNNIVDYIITHHKRKTHNQRFTAIFC--VPSVEVLIRYYVLFKKKAV 519

Query: 448 AENRKYVMRI-----TGDDQEGKAELDN 470
            E   Y +         D+  GK E DN
Sbjct: 520 EEQHDYKIATIFSYGANDELLGKDEQDN 547