Pairwise Alignments

Query, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

Subject, 1142 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  159 bits (401), Expect = 1e-42
 Identities = 163/578 (28%), Positives = 263/578 (45%), Gaps = 82/578 (14%)

Query: 15  YIAPAIQHAGWDMHKQVRE--EVSFTKGRIMVRGKLHSRGEARRADFILYHQANLPIAVI 72
           YI  A++ AGW    ++RE  E+ F    + +       G     D++L+    LP+AV+
Sbjct: 223 YIDSALKDAGWT---RLREGYELEFEVSGMPLSTNPSGVGFV---DYVLWSDNGLPLAVV 276

Query: 73  EAKDNKHSVGSGMQQALGYAEALDV-----PFVFSSNG-DGFLFHDRSGTDSKVETELSL 126
           EAK    +   G  QA  YA+ L+      P ++ +NG D +L+ D    D KV   ++ 
Sbjct: 277 EAKKTTANSSKGRHQASLYADCLEKKFKQRPLIYYTNGFDFYLWDDLFAPDRKVSGFMTK 336

Query: 127 DQFPSPAELWHRYCQWKGLDNAVQHKIEAPYYDDGSGRMP---RYYQMNAINRTVEAVAR 183
           DQ                L+ A++ + E     D    +    R YQ  AI R  E ++ 
Sbjct: 337 DQ----------------LELAIRRRKERKDLRDFKVNLAITGRPYQTEAIQRVAENLSV 380

Query: 184 GQD--------RVLLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNILVDQTKN-- 233
            +D        + LL+MATG+GKT T+  I+  + K    KRILFLADRN LV Q KN  
Sbjct: 381 IKDGKIKQRHRKSLLIMATGSGKTRTSASIVDMMVKCNWAKRILFLADRNALVTQAKNAF 440

Query: 234 NDFKPFGQAMTKIARRQIDTS---YEIYLSLYQAVTGAEEEMNVYKQFSRDFFDLIVIDE 290
            +  P   ++     ++ D++   +  Y ++   +  A +    +  +    FDLI+IDE
Sbjct: 441 TEHLPDLTSIDLTKEKENDSTRLVFSTYPTMMNQIDQARDGEGRF--YGVGHFDLIIIDE 498

Query: 291 CHRGSAAEDSAWREILGYFSNATHVGLTATPKETKEVSSITYF----GEPVYSYTLKQGI 346
            HR    +   +R I  YF +A  +GLTATPK+  + ++   F      P ++Y L Q +
Sbjct: 499 AHRSVYQK---YRAIFQYF-DAFILGLTATPKKDVDHNTYELFEIEDDNPTFAYELDQAV 554

Query: 347 EDGFLAPYKVVRIDF-------------DKDLQGWRPPKGMLDKNGELIEDRIYNLKDMD 393
            D FL P + + +               +K+   +    G  D + E  ED I   +   
Sbjct: 555 NDSFLVPPRAISVPLKFMREGIKYSELSEKEKLEYEEKFG--DPSNEEAEDGIDKSQLYK 612

Query: 394 RTLVIETRTQLVAQKVTEFLK--ASDPFQKTIVFCDDINHAERMRQALVNLNPERVAENR 451
                 T  Q++   +T  +K    D   KTI+F  +  HA  + +      PE    + 
Sbjct: 613 WLFNSNTVDQVLNHLMTSGIKVDGGDKIGKTIIFAKNHKHAVYIEERFNKNYPE---YSG 669

Query: 452 KYVMRITGDDQEGKAELDNFI-NPEERYPVIATTSKLMTTGVDAQTCKLIVLDQHIKSMT 510
           K+   I    ++ +  L+ F+ + EE+ P IA +  +M TGVDA     +V  + ++S+ 
Sbjct: 670 KFCRVIDNQTEKAQDILERFVLDKEEKEPQIAISVDMMDTGVDAPRVVNLVFFKPVRSVA 729

Query: 511 EFKQIIGRGTRINED-FG----KYWFTIMDFKKATELF 543
           +F Q+IGRGTR+  + FG    K  F I D+ +  E F
Sbjct: 730 KFWQMIGRGTRLRPNLFGPGQHKDSFLIFDYCENFEFF 767