Pairwise Alignments

Query, 787 a.a., Type I restriction enzyme EcoAI R protein from Pseudomonas putida KT2440

Subject, 1170 a.a., endonuclease R Type I restriction enzyme from Escherichia coli BL21

 Score =  162 bits (409), Expect = 1e-43
 Identities = 173/639 (27%), Positives = 277/639 (43%), Gaps = 136/639 (21%)

Query: 3   KKSLSERDICSKYIAPA-IQHAGWD-------MHKQVREEVSFTKGRIMVRGKLHSRGEA 54
           K++L+  +  S+++  A ++ AGW          K  R E    K            G  
Sbjct: 235 KRTLNLSEEESRFLIDAQLRKAGWQADSKTLRFSKGARPEPGVNKAIAEWPTGKDETGNQ 294

Query: 55  RRADFILYHQANLPIAVIEAKDNKHSVGSGMQQALGYAEALD------------------ 96
             AD++L+     PIAV+EAK     V   + ++  Y++  D                  
Sbjct: 295 GFADYVLFVGLK-PIAVVEAKRKNIDVPGKLNESYRYSKCFDNGFLRETLLEHYSPDEVH 353

Query: 97  --------------------VPFVFSSNG----------DGFLFHDRSGTDSKVETELSL 126
                               +PF +S+NG           G  + D   T +  +   +L
Sbjct: 354 EAVPEYETSWQDTSGQQRFKIPFCYSTNGREYRAAMKIKSGIWYRDVRDTRNMSK---AL 410

Query: 127 DQFPSPAELWHRYCQWKGLDNAVQHKIEAPYYDDGSGRMP---RYYQMNAINRTVEAVAR 183
            ++  P EL     +  G +   Q++    ++ D  G      RYYQ +A+    +A+ +
Sbjct: 411 PEWHRPEEL----LEMLGSEPQKQNQ----WFADNPGMSELGLRYYQEDAVRAVEKAIVK 462

Query: 184 GQDRVLLVMATGTGKTYTAFQIIWRLWKSKQKKRILFLADRNILVDQTKN--NDFKPFGQ 241
           GQ  +LL MATGTGKT TA  +++RL +S++ KRILFL DR  L +Q      D +  G 
Sbjct: 463 GQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGD 522

Query: 242 AMTKI------ARRQIDTSYEIYL----SLYQAVTGAEEEMNVYKQFSRDFFDLIVIDEC 291
               I        +  + S +I++    SL +    ++E M V +      +D IV+DE 
Sbjct: 523 TFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR------YDCIVVDEA 576

Query: 292 HRGSAAED----------------SAWREILGYFSNATHVGLTATPKETKEVSSITYFGE 335
           HRG   +                 SA+R IL +F +A  + LTATP     + ++  FGE
Sbjct: 577 HRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF-DAVKIALTATP----ALHTVQIFGE 631

Query: 336 PVYSYTLKQGIEDGFLAPY-KVVRIDFDKDLQGWRPPKG----MLDKNGELIEDRI---- 386
           PVY YT +  + DGFL      ++I      +G    KG     +   GE+I D +    
Sbjct: 632 PVYRYTYRTAVIDGFLIDQDPPIQITTRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQ 691

Query: 387 -YNLKDMDRTLVIETRTQLVAQKVTEFLKASDPFQKTIVFCDDINHAERMRQALVNLNPE 445
            + + D +R LVI    + V  ++T +L  +   QKT+VFC    HA+ + + L      
Sbjct: 692 DFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFCVTNAHADMVVEEL------ 744

Query: 446 RVAENRKY-------VMRITGDDQEGKAELDNFIN--PEERYPVIATTSKLMTTGVDAQT 496
           R A  +KY       +++ITGD  +   ++   I    +ER P I  T  L+TTGVD  +
Sbjct: 745 RTAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDIPS 804

Query: 497 CKLIVLDQHIKSMTEFKQIIGRGTRINEDFGKYWFTIMD 535
              IV  + ++S   ++Q+ GR TR+  +  K  F I D
Sbjct: 805 ICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFD 843